Gene Information

Name : CAP2UW1_0768 (CAP2UW1_0768)
Accession : YP_003166042.1
Strain : Candidatus Accumulibacter phosphatis UW-1
Genome accession: NC_013194
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 888593 - 889963 bp
Length : 1371 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_0662 helix-turn-helix, fis-type

DNA sequence : 
ATGTCACTAGGCAAGGCGGAGCGGCGCCCGCGCGGCGAGTTGGCAAGAGTGCTGGTGGTCGACGACGAGGCGGATATCCG
CGAACTGCTCGACCTGACCGTGGCTCGTATGGGCCTTTCGGCCGACTGCGCGGCAACTGTGGCGCAGGCGCGGCAGCTGC
TCGAACAGCACCGCTATCAGCTGTGCCTTACCGATATGCGATTGCCCGACGGGGAGGGATTGGAGATCGTACGGCTGATC
GGTGAGCGCTACGGCGAGACACCGGTGGCGGTGATAACGGCTTTCGGCAGCGCTCAGAACGCCGTCGCCGCGCTCAAGGC
AGGAGCCTTTGACTATCTCGCGAAGCCGGTTGCGCTCGATCAATTGCGCAGCCTGATCAAGTCGGCGCTCAGTCTTCCCA
CAAGGAGTGGATCCAGCGAAGCCGGGCAGCCGTCGGGCGCTGCGGCGCAACTGATCGGCGAGTCGATGGCGATTGCCCAG
GTGCGCCAGATGATCGAGAAGCTGGCACGCAGCCAGGCGCCGCTGTATGTCTCCGGCGAGTCGGGCACCGGCAAGGAACT
CGCGGCACGCCTGATCCACGACCACAGCGCGCGCCGCACCGCGCCGTTCGTTCCGGTCAACTGCGGGGCGATTCCCGAGA
ACCTGATGGAAAGCGAGTTCTTCGGCTATCGCAAGGGCGCATTCACCGGCGCCGACAGCGACCGCGCCGGTTTCTTCCAG
GCGGCCACCGGTGGGACACTGTTTCTGGACGAGGTTGCCGATCTGCCGCTGTTGATGCAGGTCAAGCTCCTGCGTGCCAT
CCAGGAGAAGAAAGTGCGCAAGGTGGGCAGCACTGTCGAGGAGGCGGTCGATGTGCGCATCATCTCGGCGACCCACCGAA
TGCTCAAGGACTGTGTTGACGCCGGATCGTTTCGTCAGGATCTCTATTACCGTCTGAACGTCATCGAACTCAGGATGCCG
CCCCTGCGCGAGCGTCAGGAAGATGTCGAGCCCCTGGTCGCGGCGCTGCTGGTGCGCATCTGCGGAGCGCAGCCGCCGCG
CGTCGAGGCGGCAGCCATGCGCGCGCTGAAGGCGTACAGCTTTCCCGGGAATGTCCGGGAACTGGAGAATGTCCTCGAGC
GGGCTACCGCCTTGTGCAGCAACGACACGGTGCTGATCGACGATCTGCAACTGGCTCCGGTCATGGCGGTGAGTGACAGC
GTGGGCAGGGATGGCGAAACTCTGGACGACTACATCAACCGTGTCGAGAAGCAGGCAATCGTCGAAGCCTTGACGAAGAC
CGACTTCAACCGGACGGCGGCTGCCAGACTGCTCGGCGTGACCTTTCGCTCGCTGCGCTATCGTATCGAACGGCTGGGCA
TCGAAGAGTGA

Protein sequence : 
MSLGKAERRPRGELARVLVVDDEADIRELLDLTVARMGLSADCAATVAQARQLLEQHRYQLCLTDMRLPDGEGLEIVRLI
GERYGETPVAVITAFGSAQNAVAALKAGAFDYLAKPVALDQLRSLIKSALSLPTRSGSSEAGQPSGAAAQLIGESMAIAQ
VRQMIEKLARSQAPLYVSGESGTGKELAARLIHDHSARRTAPFVPVNCGAIPENLMESEFFGYRKGAFTGADSDRAGFFQ
AATGGTLFLDEVADLPLLMQVKLLRAIQEKKVRKVGSTVEEAVDVRIISATHRMLKDCVDAGSFRQDLYYRLNVIELRMP
PLRERQEDVEPLVAALLVRICGAQPPRVEAAAMRALKAYSFPGNVRELENVLERATALCSNDTVLIDDLQLAPVMAVSDS
VGRDGETLDDYINRVEKQAIVEALTKTDFNRTAAARLLGVTFRSLRYRIERLGIEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-98 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-98 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_0768 YP_003166042.1 two component sigma-54 specific Fis family transcriptional regulator BAC0467 Protein 2e-70 44
CAP2UW1_0768 YP_003166042.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 6e-67 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_0768 YP_003166042.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 6e-121 57