Gene Information

Name : CAP2UW1_3278 (CAP2UW1_3278)
Accession : YP_003168472.1
Strain : Candidatus Accumulibacter phosphatis UW-1
Genome accession: NC_013194
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 3769526 - 3770596 bp
Length : 1071 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: tbd:Tbd_0099 NAD-dependent epimerase/dehydratase

DNA sequence : 
GTGGCGTCTCTGAGTTCTTCTCTTTCCCCCTTCGCGGTCCTCGGCAAGCGGCTGACGGCGCAGCCGGCGCGCTGGCTGGT
GACCGGAAGTGCCGGCTTCATCGGCTCGCATCTGGTCGAGTCGCTGCTTCGACTCGACCAGACCGTCGTCGGGCTCGACA
ACTTCGCCACCGGTCATCGCCGCAACCTCGACGAGGTTCGCTCGCTGGTGACCCCGGCGCAATGGTCGCGCCACCGTTTC
GTCGAGGCCGACATCTGTGACCTGGACGCCTGTCGCGAGGCGTGCCGCGGCATTGACTTCGTGCTCCATCAGGCGGCGCT
GGGCTCGGTTCCGCGCTCGCTGGCCAATCCCGTGGCGACCAATGCCGCCAATGTGGACGGCTTCCTGAACATGCTCGTCG
CGGCGCGTGATGCCGGGGTCAGGCGTTTCGTCTATGCGGCGTCGAGTTCCACCTACGGTGATCATGAGGCGTTGCCGAAG
ATCGAAGAGCGCATCGGTCGGCCGTTGTCCCCGTACGCGGTGACCAAGCTGGTCAATGAGCTCTACGCCGAAGTGTTTGC
GCGCTGCTATGGCCTGGCGCCGATCGGTTTGCGGTATTTCAACGTTTTCGGCGCCCGCCAGGATCCGGAAGGTGCGTACG
CCGCGGTGATTCCACGGTGGACGCGGGCGATGCTTCTTGGCGAGGAGGTGAAGATCAACGGCGACGGCGAGACCAGCCGT
GACTTCTGCTTCGTCGACAATGCGGTGCAGGCAAACCTGCTGGCGGCGACGACCGACGATCCGGCGGCGGTCAATCAGGT
CTATAACGTCGCGGTCGACGATAGAACATCGCTGAATCGGCTGTTCGACATGCTTCGCGATGCGCTGTCCGACTTCCGGC
CTGACGTACGCTCGCTGCGGCCGGTGTACGGCGGCTTTCGGCCCGGCGACGTCCGTCATTCGCAGGCCGACATCGACAAG
GCCAGGCGTCTGCTCGGCTACCTGCCGAGCCACCGGCTCGAAGACGGGGTACGCGTGGCGATGCCGTGGTATGTTTCCCG
TTTTGCTGTCGCCGACGAGGTCTGTCGATGA

Protein sequence : 
MASLSSSLSPFAVLGKRLTAQPARWLVTGSAGFIGSHLVESLLRLDQTVVGLDNFATGHRRNLDEVRSLVTPAQWSRHRF
VEADICDLDACREACRGIDFVLHQAALGSVPRSLANPVATNAANVDGFLNMLVAARDAGVRRFVYAASSSTYGDHEALPK
IEERIGRPLSPYAVTKLVNELYAEVFARCYGLAPIGLRYFNVFGARQDPEGAYAAVIPRWTRAMLLGEEVKINGDGETSR
DFCFVDNAVQANLLAATTDDPAAVNQVYNVAVDDRTSLNRLFDMLRDALSDFRPDVRSLRPVYGGFRPGDVRHSQADIDK
ARRLLGYLPSHRLEDGVRVAMPWYVSRFAVADEVCR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 9e-104 61
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 9e-104 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_3278 YP_003168472.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 4e-104 61