|
Name : CAP2UW1_1871 (CAP2UW1_1871) Accession : YP_003167098.1 Strain : Candidatus Accumulibacter phosphatis UW-1 Genome accession: NC_013194 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2108373 - 2111531 bp Length : 3159 bp Strand : - Note : KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases DNA sequence : ATGACCGAAGATCACCTCGAACAAGAAGCGCTCGGCTGGCTGACCGAAGTCGGCTACGACACCCTTTACGGCCCTGACAT CGCCCCCGACGGCGCCAACCCGGAGCGCGCTGGCTACCAGCAGGTGCTGCTGCCGTTCCGGTTGCGCGAGGCGATTCACC GCCTGAACCCCTCCATCCCTCTCGCCGCCCGCGAGGATGCACTCAAGCAAGTGCTCGACCTCGGCATCCCGGCCTTGCTG TCGGCCAACCGCCACTTTCACAAGCTGCTGGTCGGCGGCGTACCGGTGCAATACCAGAAGGACGGCGAAACCCGGGGTGA CCTGGTCCGCCTGATCGACTGGACCAACCCCGCCAAGAACAAGTGGCTGGCGATCAACCAACACTCGATCAAGGGGCCGC ACCACACCCGCCGGCCGGACATCATCCTGTTCATCAACGGGCTGCCCCTGGTGTTGATCGAACTGAAGAACCCGGCCGAC GGAAACGCGGACATCTGGCGGGCCTACGACCAGCTTCAGACCTACAAGGAACAGATTCCGGACGCCTTCCAGTACAACGA GGTGCTGATCATCTCCGACGGCAGCGAGGCACGCTTCGGATCCCTCTCGGCCAATGCCGAGCGATTCATGCAGTGGCGCA CGATCGACGGGGTGGCGCTCGACCCACTCGGCGAATTCAACGAACTGGAGACGCTGGTACGCGGCCTGCTGGCTCCGGCC ATCCTGCTCGACTACCTGCGCTTCTTCGTCCTCTTCGAAGATGACGGCGCATTGGTCAAGAAGATCGCCGGCTATCACCA GTTCCATGCGGTGCGCGCGGCGATCGATCAGGTGGTTACCGCCTCGCGCCCCGGCGGTACGCACAAGGGCGGCGTCGTCT GGCATACGCAGGGCAGCGGCAAGAGCATCACGATGACCTGCTTCGCCGCCCGGGTGATGCAGGAAGCGGTGATGGAGAAC CCGACCATCGTCGTCATCACCGACCGCAACGACCTCGACGGCCAGCTGTTCGGCGTCTTCTCGCTGGCGCAGGACCTTCT GCGCGAGGAACCGGTACAAGCCAACACCCGGCAAGACCTGCGCGCCAAGCTCGGCAACCGCCCCTCGGGCGGCATCGTCT TCGCCACCATCCAGAAGTTCATGCCTGGCGAGGACGAGGACGCCTACCCGACCCTCTCCGACCGCCACAACATCGTGGTG ATTGCCGACGAAGCCCACCGCACCCAGTACGGCTTCGAGGCCAGGCTCAAGACCGTCCGGGCGCCCCGGAACACGGCCGG CGACGGCGTCAACGACGCCAACGCGCGGCTCGCCGCCGAGCCCGCCGCGTCGTACCTTTCGCGCTACCAGGTCGGCTACG CCCAGCACCTGCGCGACGCCTTGCCCAATGCGACCTTCGTCGCCTTCACGGGGACCCCGGTATCGAGCGAGGACCGCGAC ACGCGTGCCGTGTTCGGCGACTACATCCACGTCTACGACATGCAACAGGCGAAGGAGGATGGGGCGACCGTCGCCATCTA CTTCGAGTCGCGCCTCGCAAAACTGTCGCTGAACGAGGCCGAGCTGCCGCACATCGACGACGAGGTCGATGAACTCGCCG AGGACGAGGAGGAAGGACAGCAGGCCCGGCTGAAGAGCAAGTGGGCAGCGCTCGAAAAGGTGGTCGGTGCCGAACCCCGT ATCGCCAGCGTCGCCGCCGATCTGGTCGCCCACTTCGAAGAACGCAGCCAGGCCCAGACCGGCAAGGCGATGGTCGTCGC CATGAGCCGCGAAATCTGCGTCCATCTCTACAACGAGATCACCAGGTTGCGCCCCGAGTGGCATGACGCCGATCCGGAAA AGGGGGCGATCAAGATCGTCATGACCGGTTCCGCCAGCGACAAGGCACTGCTCCGGCCGCACATCTATAGCGCACAGGTC AAGAAGCGCCTCGAGAAGCGCTTCAAGGATCCCGCGGACCCACTGCGCATCGTCATCGTGCGGGACATGTGGCTGACCGG CTTCGATGCGCCCTGCGTGCATACGATGTACATCGACAAGCCGATGAAGGGCCACAACCTGATGCAGGCCATCGCCCGCG TCAATCGCGTGTTCAAGGACAAGCAGGGTGGGTTGGTGGTGGATTACATCGGCATCGCCAACGAACTCAAGAGCGCGCTC AAGGAATACACCGCCAGCCAGGGGCGCGGCCGGCCGACGGTCGATGTCGCCGAAGCGTATGCGGTGCTGGAGGAGAAACT CGACATCCTGCGCGGGATGTTGCACGGCTTCGATTACAGCGACTTCCTGACCACCGGCCACCGGCGACTCGCCGGCGCCG CCAACCATGTGCTCGGGCAGAAGGACGGCAAGAAGCGATTTGCGGATACCGCACTGGCGATGAGCAGGGCATTCACCCTC TGTTGCACACTGGACGCGGCCAAGGAAGTACGCGAAGAGGTCGCCTTCATGCAGGCGGTGAAGGTCATCCTGACCAAGCG CGACCTCAGTCAGCAGCGCCGTACGGATGAGCAGCGCGAACTGGCAATCCGGCAGATCATCAATTCGGCCATCGTTTCCG AGGAAGTGGTCGATGTGTTCGACGCGGTCGGCCTCGACAAGCCGAACATCGGGATTCTCGACGACGCCTTTCTCGCCGAG GTGCGCAACCTGCCCGAGCGCAATCTTGCCGTCGAACTGCTGGAGCGCCTGCTCGAAGGGGAGATCAAGAGCCGCTTTGC CGGCAACGTGGTGCAGGCGAAGAAGTTCTCCGAGTTGCTGACCAACGTGATCAAGCGCTACCAGAACCGGGCCATCGAAA CTGCGCAGGTCATCGAAGAACTGATCGAGATGGCCAAGAAGTTCCGCGCGGCGGCGAACCGGGGCGAGGCACTGGGGCTG ACCGAAGACGAGGTTCGCTTCTACGATGCCTTGGCCGACAACGAATCGGCGGTACGTGAGCTGTCTGACGAAACCTTGAA GAAGATCGCCCACGAACTGACCGAGAGCCTGCGCCAGAACATCACCGTGGATTGGTCGGCGCGGGACAGCATCCGCGCCA GGCTTCGACTCATGGTCAAACGCATCCTCCGCAAGTACAAGTACCCCCCGGATCAGCAGGAGGCGGCAATCGAGCTGGTG CTGAAGCAGGCTGAGGTGTTGGGCGAAGAGTGGATGTGA Protein sequence : MTEDHLEQEALGWLTEVGYDTLYGPDIAPDGANPERAGYQQVLLPFRLREAIHRLNPSIPLAAREDALKQVLDLGIPALL SANRHFHKLLVGGVPVQYQKDGETRGDLVRLIDWTNPAKNKWLAINQHSIKGPHHTRRPDIILFINGLPLVLIELKNPAD GNADIWRAYDQLQTYKEQIPDAFQYNEVLIISDGSEARFGSLSANAERFMQWRTIDGVALDPLGEFNELETLVRGLLAPA ILLDYLRFFVLFEDDGALVKKIAGYHQFHAVRAAIDQVVTASRPGGTHKGGVVWHTQGSGKSITMTCFAARVMQEAVMEN PTIVVITDRNDLDGQLFGVFSLAQDLLREEPVQANTRQDLRAKLGNRPSGGIVFATIQKFMPGEDEDAYPTLSDRHNIVV IADEAHRTQYGFEARLKTVRAPRNTAGDGVNDANARLAAEPAASYLSRYQVGYAQHLRDALPNATFVAFTGTPVSSEDRD TRAVFGDYIHVYDMQQAKEDGATVAIYFESRLAKLSLNEAELPHIDDEVDELAEDEEEGQQARLKSKWAALEKVVGAEPR IASVAADLVAHFEERSQAQTGKAMVVAMSREICVHLYNEITRLRPEWHDADPEKGAIKIVMTGSASDKALLRPHIYSAQV KKRLEKRFKDPADPLRIVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKSAL KEYTASQGRGRPTVDVAEAYAVLEEKLDILRGMLHGFDYSDFLTTGHRRLAGAANHVLGQKDGKKRFADTALAMSRAFTL CCTLDAAKEVREEVAFMQAVKVILTKRDLSQQRRTDEQRELAIRQIINSAIVSEEVVDVFDAVGLDKPNIGILDDAFLAE VRNLPERNLAVELLERLLEGEIKSRFAGNVVQAKKFSELLTNVIKRYQNRAIETAQVIEELIEMAKKFRAAANRGEALGL TEDEVRFYDALADNESAVRELSDETLKKIAHELTESLRQNITVDWSARDSIRARLRLMVKRILRKYKYPPDQQEAAIELV LKQAEVLGEEWM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 56 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
