Gene Information

Name : CAP2UW1_1822 (CAP2UW1_1822)
Accession : YP_003167052.1
Strain : Candidatus Accumulibacter phosphatis UW-1
Genome accession: NC_013194
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2044351 - 2045373 bp
Length : 1023 bp
Strand : +
Note : TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: mfa:Mfla_0410 integron integrase

DNA sequence : 
ATGGGCACGTTCACTAAAAATTCCGACAATTGCGTCAATGCCAACGGCGTTGTCCGGCCTCCCAAGAGGCTCCTTGACCA
ACTCTCCGAAAGCATACGCCTCAAGCACTATAGCATACGGACGGAGCAGGCTTACAGGGGCTGGGTACGACGTTTCATCC
TTTTCCATGGCAAGCGCCACCCTCAGGAAATGGGGGCACGGGAGGTCGAGACGTTTCTCACCCATCTCGCCGTCGAAGGG
CGGGTTTCCGCATCCACGCAGAATCAGGCAAAAAGCGCTCTGCTCTTTCTCTACAAGGAGGTGCTGAGGACTGATCTCCC
TTGGCTGGATGATGTCGAGTCGGCGAAGTCCGGCAAGCGTCTGCCCGTGGTGCTGACGCCCGAAGAAGTGCAGCGCCTGC
TCGGGCCGATCGAGGGAACCACGGGCCTGATCCTCCGGCTGCTTTACGGTACGGGGATGCGCATCATGGAGTGCCTGCGC
CTGCGCGTTAAGGATGTGGACTTTGCTCGCCGCGAAATCCTGGTGCGCGAGGGAAAGGGGTTCAAAGACCGGGTGACGAT
GCTGCCCGAGAAGCTGATGGCGCCGCTGGGGGAGCATCTGGCACGCGTGAAGGCGCTGCATGCGGCTGATCTGTCTGCGG
GCTTTGGGGACGTCTACCTGCCATGGGCTCTGGAGAGGAAATATCCGAACGCGGCGCGTGAATGGGCATGGCAGTACGTC
TTCGTTGCCGCCAGGCGACCGGTCGATCCGCGTTCCGGGGCGGTGCGGCGACACCACGTGGAGGCGCAGAGTATTCAGCG
TGCAATGCACCAGGCGCTGCGCGTTGCGGGAGTCAGCAAGCCGGCTACCCCGCACACTCTGCGCCATTCGTTCGCCACAT
CCCTCCTGGAAACCGGCTACGACATCCGCACCGTGCAGGAGCTGCTGGTGGGTCATTCCGATGTGAGCACGACGATGATC
TACACGCACGTGCTCAAGCGCGGTGGGCACGGCGTTCGCAGTCCGCTCGACATGCTGGGGTAG

Protein sequence : 
MGTFTKNSDNCVNANGVVRPPKRLLDQLSESIRLKHYSIRTEQAYRGWVRRFILFHGKRHPQEMGAREVETFLTHLAVEG
RVSASTQNQAKSALLFLYKEVLRTDLPWLDDVESAKSGKRLPVVLTPEEVQRLLGPIEGTTGLILRLLYGTGMRIMECLR
LRVKDVDFARREILVREGKGFKDRVTMLPEKLMAPLGEHLARVKALHAADLSAGFGDVYLPWALERKYPNAAREWAWQYV
FVAARRPVDPRSGAVRRHHVEAQSIQRAMHQALRVAGVSKPATPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMI
YTHVLKRGGHGVRSPLDMLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 3e-67 62
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 6e-87 62
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 7e-86 62
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 8e-87 62
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 6e-87 62
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 7e-86 62
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 6e-87 62
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 4e-86 62
intI1 AAK02045.1 integrase Not tested SGI1 Protein 7e-86 62
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 6e-87 62
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-86 62
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 7e-86 62
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 6e-87 62
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-86 62
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 7e-86 62
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 2e-86 62
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 6e-87 62
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 6e-87 62
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 7e-86 62
intI YP_001844881.1 integrase Not tested AbaR20 Protein 8e-87 62
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 6e-87 62
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 7e-86 62
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 8e-87 62
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 6e-87 62
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 7e-86 62
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 8e-87 62
int1 YP_005160012.1 integrase Not tested Not named Protein 3e-72 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_1822 YP_003167052.1 integron integrase VFG1028 Protein 2e-86 62