Gene Information

Name : CAP2UW1_1803 (CAP2UW1_1803)
Accession : YP_003167033.1
Strain : Candidatus Accumulibacter phosphatis UW-1
Genome accession: NC_013194
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 2027560 - 2028648 bp
Length : 1089 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase

DNA sequence :
ATGATTACGAAGGAGGTGTATGTGGAAATTGAAGTATTGAGGAAGCATGGATTCAGTCTGCGCAAGATTGCAGCCGAAGT
GGGCTGCGCGGTGAATACGGTTCGCAGCCACTTGGCGCAGGGCAAACAGCCCCGCTACCAGCGTCAGAAGAAGCGGGCCA
CCAAACTCTCGACCCATGAAACGTACCTGTGCGAGCGACAGGCTGCAGCGCAGCCGCAGTGGATCCCGGCCACGGTTCTG
TTCAGGGAGATTAGGGCCCTGGGCTACGCCGGCGGCGTCAGCCAATTGCGCGCCTTCATGCGTACGATCCGGCCGCAGGG
GGCTGCTGATCCGGTGGTGCGTTTCGAAACGGCACCGGGCGAACAGTTGCAAATCGACTGGGTCGAGTTTCGTAAAGGTG
CTGATCCGCTGTACGCCTTCTGCGCGACCCTTGGGTACAGCCGGGCGAGTTACGTCGAATTCGTCACCGACATGAAAGTC
AGTACGCTGATCGACTGCCACCAGCATGCCTTTGAGGCGCTCGGTGGCGTGGCCCGGCGCCTGCTCTACGACAACATGAA
GACCGTTGTTCTCGAACGCGACGTCGACGGCCCAGGCGAACACCGCTATCACGCGGGCTTTCTCGACTACGCCAAGCACT
GTGGCTTCGTCATCAACCTGTGCCGTCCCTATCGCGCCCGGACCAAAGGCAAGGTCGAGCGCTTCAACGGCTACCTTCGC
CGCTCCTTCTACGTTCCCCTGATCAGTCGGCTCAAGCAGGCCGGCCTGCCACTGGACGCCGTGACCGCCAATGCCGAGGT
CAGGCGCTGGCTCAAGGAAGTGGCCAACGTGCGTATCCACGCCAGCACGCAAGTACAGCCCGCACAACGCCTGCAGGAAG
AGCAGGCGCATCTGCAAGGCATTCCCCCGCCATGGCGCGGCGATATCGCCGCCGCTCGTCCCCTGGACGCCCCGCCGCCG
GTCGAGGGGGCCACTGTCCGCCCGACGGTTGCCGAGAGAATCGCCTTGCCCACGCCGGAGCAGCATCCGCTCGCCGTCTA
CGCGCAACTGCTGACCCAACTGCAGGCCGCTGCAGAGATGCAGCCATGA

Protein sequence :
MITKEVYVEIEVLRKHGFSLRKIAAEVGCAVNTVRSHLAQGKQPRYQRQKKRATKLSTHETYLCERQAAAQPQWIPATVL
FREIRALGYAGGVSQLRAFMRTIRPQGAADPVVRFETAPGEQLQIDWVEFRKGADPLYAFCATLGYSRASYVEFVTDMKV
STLIDCHQHAFEALGGVARRLLYDNMKTVVLERDVDGPGEHRYHAGFLDYAKHCGFVINLCRPYRARTKGKVERFNGYLR
RSFYVPLISRLKQAGLPLDAVTANAEVRRWLKEVANVRIHASTQVQPAQRLQEEQAHLQGIPPPWRGDIAAARPLDAPPP
VEGATVRPTVAERIALPTPEQHPLAVYAQLLTQLQAAAEMQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 1e-65 48
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 2e-65 48
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 1e-65 48
y2411 NP_669718.1 transposase Not tested HPI Protein 2e-65 48
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-65 48
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 2e-65 48
unnamed CAA21403.1 - Not tested HPI Protein 2e-65 48
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 2e-65 48
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 1e-65 48
api83 CAF28557.1 transposase Not tested YAPI Protein 1e-65 48
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 1e-65 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_1803 YP_003167033.1 integrase catalytic subunit VFG1626 Protein 7e-66 48
CAP2UW1_1803 YP_003167033.1 integrase catalytic subunit VFG1607 Protein 7e-66 48
CAP2UW1_1803 YP_003167033.1 integrase catalytic subunit VFG1461 Protein 1e-65 48
CAP2UW1_1803 YP_003167033.1 integrase catalytic subunit VFG1514 Protein 7e-66 48