Gene Information

Name : CAP2UW1_0118 (CAP2UW1_0118)
Accession : YP_003165407.1
Strain : Candidatus Accumulibacter phosphatis UW-1
Genome accession: NC_013194
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 137151 - 139082 bp
Length : 1932 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mms:mma_2254 nucleo

DNA sequence :
ATGATGAAAGCCTTCTTGTCCCTGTCGCGTGGCCGCAAGCAGGCGGTGGCGATCGTCACCGACTTCGCGCTGCTCCTGCT
GGCCTTGTGGTCGGCGCTGGCGCTGCGCTTCGAAACGTGGACTCCCAGCTTCGCCACCTATGGATGGCAGGTGCTGGCTG
CACCCCTACTGGCGATTCCCATCTTCATTCGCCTGGGCCTGTACCGGGCAGTTATCCGCTTCATGGAGGACCGGGTTGTT
TTCGTGGTCACCGGCGGCGTGGCCCTGTCGGTCGTCCTGTTGGCGGCCGGTATAGCCCTGACCCATACGCCAGGACTTTC
GCGTGGTGTTCTCGGGATTTATTGCATGTTGGCCATCCTCTACGTCGGCACCGCGAGGTTCCTGGCGCGCAGCTATTTCC
TGCGTGCAGAACGCGCCGAGGATTCGCGCAAGCGGGTGGCCATTTATGGTGCCGGTAGTGCGGGAACACAGTTGGCTTAC
GCCTTGCGTGCTGGTCGGGAGTACCTGCCGGTGGCTTTCGTTGACGACAATGCGGCTTTGCAGCGAATTGAAGTCGCCGG
TTTGCGGGTTCAGTCGCCCGATCAGTTGATGCCCATGATGGCTGCCGGGCGCATCGAGGAGGTGCTGCTGGCAATCCCGT
CAGCCAGTCGGTCACGCCGGGCGGAGATCATCGGCAGCCTCGAGGGTCTCCATTGCAAGGTCAGGCTGGTTCCCGGCATG
GCGGATGTGGTGAGCGGCAACGTGACGGCCGACGCCATCCGGGAGGTCGAAATCGAGGACCTGCTGGGTCGCGAATCCGT
GGCGCCCGACGCGGCATTGCTGGGTCGCTGCGTCACGGGGAAGGTGGTAATGGTTTCCGGGGCTGGCGGCTCGATCGGCG
CGGAACTCTGCCGACAGATTGTCCAGCTGCGACCCAGCCGCCTGGTCCTGATGGAGCGTTCCGAGTTTGCCCTCTATTCG
ATCGAGCAGGAGTTGGCCACGCTCTGCGTGGGCGGCAGTGCGTGCGTCGAACTCGTGCCCGTACTGGGTTCGGTACTTCA
CCAGAAGCGCAACGAAATGGTGATGAAGAGTTTCGGAGTGCAAACGGTCTACCATGCGGCCGCCTACAAACATGTCCCTC
TGGTCGAGCATAACCCGATCGAGGGCCTGCGCAACAATGCCGTGGGCACGCGGCGAATGGCCGAAGCGGCGCTGGCGGCC
GGCGTCGGCACCTTCGTTCTGATCTCGACCGACAAGGCGGTACGTCCGACCAATGTGATGGGCGCCAGCAAGCGGCTTGC
CGAGCTCATCCTGCAGGCATTGGCGCGAAGCGGTGGAGGCACGCGTTTCTGCATGGTGCGCTTTGGCAATGTGCTGGGTT
CCTCCGGATCGGTCGTGCCCCTCTTTCGCCGGCAGATCGCCGCCGGCGGCCCGATCACCCTGACGCACGCCGAGATCACG
CGCTACTTCATGACCATCCCCGAGGCGGCACAACTCGTCATTCAGGCGGGATCGATGGGTGAAGGCGGCGAAGTCTATGT
TCTGGACATGGGGAAGCCTGTTAGAATCATTGACCTTGCTCGCCGCATGGTGCACCTGAGCGGTCTCGAGGTGCGCGACG
AAGAGCATCCCGACGGTGACATTGCCATCGAAGTGGTTGGTCTGCGCCCCGGCGAGAAGCTCTACGAAGAGTTGCTGATC
GGCGAGAACGTCGAAGGAACGACGCATCCGCTGATCATGCGGGCGCATGAGCATGAGCTTCCGTGGGCGTTGCTGGCCGA
GCGGCTGGCGGTCATGGACGATGCCTGCCAGCGCTTCGACTACGAGCAAGCACTGGCCTTGCTGGTTTCATTGGTGAAGG
AATACTCACCGGCACCGCACGGCGATGGCGACGGCGAGTTGTTATGGAATGCGATGACCAGACCCGGCCGCGGCGAGGTT
GTCGTACATTGA

Protein sequence :
MMKAFLSLSRGRKQAVAIVTDFALLLLALWSALALRFETWTPSFATYGWQVLAAPLLAIPIFIRLGLYRAVIRFMEDRVV
FVVTGGVALSVVLLAAGIALTHTPGLSRGVLGIYCMLAILYVGTARFLARSYFLRAERAEDSRKRVAIYGAGSAGTQLAY
ALRAGREYLPVAFVDDNAALQRIEVAGLRVQSPDQLMPMMAAGRIEEVLLAIPSASRSRRAEIIGSLEGLHCKVRLVPGM
ADVVSGNVTADAIREVEIEDLLGRESVAPDAALLGRCVTGKVVMVSGAGGSIGAELCRQIVQLRPSRLVLMERSEFALYS
IEQELATLCVGGSACVELVPVLGSVLHQKRNEMVMKSFGVQTVYHAAAYKHVPLVEHNPIEGLRNNAVGTRRMAEAALAA
GVGTFVLISTDKAVRPTNVMGASKRLAELILQALARSGGGTRFCMVRFGNVLGSSGSVVPLFRRQIAAGGPITLTHAEIT
RYFMTIPEAAQLVIQAGSMGEGGEVYVLDMGKPVRIIDLARRMVHLSGLEVRDEEHPDGDIAIEVVGLRPGEKLYEELLI
GENVEGTTHPLIMRAHEHELPWALLAERLAVMDDACQRFDYEQALALLVSLVKEYSPAPHGDGDGELLWNAMTRPGRGEV
VVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-85 45
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 1e-83 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CAP2UW1_0118 YP_003165407.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 3e-133 55