Gene Information

Name : Lebu_0436 (Lebu_0436)
Accession : YP_003163340.1
Strain : Leptotrichia buccalis DSM 1135
Genome accession: NC_013192
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 455426 - 456202 bp
Length : 777 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ayw:AYWB_623 ABC-type Mn/Zn transporter, ATP-binding protein

DNA sequence : 
ATGAATCAAAATGTTTCTGATGATATTATTATAAGAGTTGAAGATTTGACGATAGCTTATGAGGATAAACCTGTTTTATG
GGATGTTGAGCTTGATATTAAAAAAGGGATTCTTATGGCTATAGTAGGCCCGAATGGGGCTGGAAAATCTACTTTAATTA
AAGCAATGCTTGATTTGCTAAAGCCTGTTACTGGAGAAGTAAAATTTTATGATGAAAAATATAGCAAAGTGCGGGATAAG
ATAGCTTATGTACCACAAAGAGGAAGTGTTGACTGGGATTTTCCCACTACTGTATTTGATGTTGTGGAAATGGGGCGTTA
TGGAAAAGTCGGGTGGTTAAAGAAAGTTAGAAAAATTGATAAGGAAAAGACGAAAGAAGCAATTCATAAGGTGGAAATGG
ATGAGTTTTCAGACAGACAGATAAGCCAGCTGTCAGGGGGACAACAGCAAAGGGTGTTTTTGGCACGGGCATTAGTGCAG
GATGCTGAAATATATTTTATGGACGAGCCGTTTCAAGGTGTCGACAGTAAAACGGAAAAATCTATTGTAAATATTTTAAA
AAAATTGCGAGATGAGAAAAAAACTGTAATTGCTGTTCATCATGATTTGCAGACGGTAAAGGATTATTTTGATTATGTGA
CATTTATAAATGTGTCTGTTATAGCTTCTGGACCTGTGGAAGAAATTTTTACTCCTGAAAATATTGAAAAAACATATAAG
AGTAAAAAAGCAACTCAAAATAATGGAAATCTGTCTGAAATTGAAAAGGAGCGATAA

Protein sequence : 
MNQNVSDDIIIRVEDLTIAYEDKPVLWDVELDIKKGILMAIVGPNGAGKSTLIKAMLDLLKPVTGEVKFYDEKYSKVRDK
IAYVPQRGSVDWDFPTTVFDVVEMGRYGKVGWLKKVRKIDKEKTKEAIHKVEMDEFSDRQISQLSGGQQQRVFLARALVQ
DAEIYFMDEPFQGVDSKTEKSIVNILKKLRDEKKTVIAVHHDLQTVKDYFDYVTFINVSVIASGPVEEIFTPENIEKTYK
SKKATQNNGNLSEIEKER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 4e-46 45
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 6e-46 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-50 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-50 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-50 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-49 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lebu_0436 YP_003163340.1 ABC transporter BAC0400 Protein 5e-71 55
Lebu_0436 YP_003163340.1 ABC transporter BAC0350 Protein 1e-50 43
Lebu_0436 YP_003163340.1 ABC transporter BAC0440 Protein 4e-47 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lebu_0436 YP_003163340.1 ABC transporter VFG0526 Protein 1e-50 43