Gene Information

Name : Jden_0919 (Jden_0919)
Accession : YP_003160880.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 971112 - 973205 bp
Length : 2094 bp
Strand : -
Note : TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: tcx:Tcr

DNA sequence :
ATGACGAAGCCACACGCGGGCCACGGACACGACCACGGGCCTTACAGTGGCCATGAGCACCACGAGCGTACTGGGCACGA
GGATCACGTTGGTCACGACGGCCACGACGGCCACGACGGCCATGTGGCACAGTTTCGGCGCCTGTTCTGGGTGAATCTCG
TGCTCGCGGTGCCAGTCGTCGCGTTCTCGCCAATGTTTGCCATGATCCTCGGCTATTCAGTACCAGGCTGGGCCACCTGG
CTCGCACCTGTTATCGGCACAGTGATGTATGTCTGGGGCGGCTCCCCATTCTTGACGGGCACGGTGAGCGAAATCAAGGC
CCGCAAACCGGGCATGATGCTGCTGATCGCCCTGGGCATCACCGTGGCCTTCCTCGCATCGTGGGGCGCAACACTCGGGC
TGTTGCATCACGAGCTCGAATTCTGGTGGGAACTCGCGCTGCTGGTGGTCATTATGCTGCTCGGGCACTGGATCGAGATG
CGTTCGCTCGCCCAGACCACTTCTGCGCTCGACTCTCTCGCGGCGCTTTTGCCCGACGAAGCCGAGCGGGTCGAGGGTGA
AACGGCCGTCACGGTGAGCCCGGCGGAGTTGCGCGTTGATGATCTCGTGATCGTGCGCCCGGGCGGCAGCGTGCCGGCCG
ACGGCATGATTGTTGACGGACGTGCGGCCATGGATGAATCGATGATCACCGGCGAATCGCTCCCCGCGACCCGCAGCGAG
GGTGATGCGGTGACCGCCGGCACGGTCGCGACCGATTCGGGGCTGCGGGTCAGAGTCACCGCCATCGGAGACGACACGAC
ACTTGCCGGCATCAACCGACTCGTCGCCGACGCACAAAACTCGTCGTCTCGGGCGCAGCGCATCGCCGACCGGGCTGCAG
GGTGGCTGTTCTGGTTCGCCCTCGCCGCAGCGGTCATCACCGCGATCGTTTGGATGCTCGTGGGCGACCCAGATGCGGCC
GTGATGCGCACCATTACCGTGCTAGTGATCGCCTGCCCGCACGCGCTCGGCTTGGCGATTCCGCTCGTGGTTTCCATCGC
CACCGAGCGCGCGGCTCGCAGCGGGGTGCTCGTGAAAGATCGTTTCGCGCTCGAGACGATGCGCCAAGTCGACGCGGTGC
TCTTCGACAAGACGGGCACACTCACCAAGGGCGAACCGGTTGTCACCCGTGTCGTGCCAGTCGGCGATGTTGACGAGCAC
GCCCTGCTGGCCCTGGCTGCCGCGGCCGAGGCCGACAGCGAGCACCCCCTCGCCAAAGCGATCGTCGCCGCGGCGAGCGA
CCGAGGCCTCAGCCTTGCACCCGCCACCGGGTTCTCTTCTTCACCGGCGGTTGGCGTCACCGCCACCGTGGCCGGCCACG
AGATTCGGGTCGGTGGGCCCCGGCTTCTGGAAGAAACCGGGCAGCCCGAGATCGGTGCAGCCGATGCCTGGCGGGCCGAA
GGTGCCATCATTCTGCATGTCGTTCGTGACGGAATCATGATCGGCGGGCTGAAGCTCGCCGATGAGATTCGCCCGGAGTC
GCGCGATGCCCTCGCCGCACTGCATCGGCTCGGTGTTGTGGTCGTGATGATCACCGGTGACGCTGCAGCCGTCGCGGGGG
AGGTTGCTCGCGAACTCGGTATCGACCGTGTGTTCGCGGGCGTGCGCCCCGAAGATAAGGCCGCGAAGGTGGCCGAGTTG
CAGCACGAAGGCACGGCTGTCGCGATGGTCGGCGACGGTGTCAACGATGCCCCCGCCCTCGCGCAAGCCGATGTTGGTAT
CGCTATCGGGGCGGGCACCGATGTGGCGATCGCGTCGGCAGGGGTGATCCTCGCCAGCTCTGACCCGCGTTCGGTGCTCT
CAGTGATCGAACTCTCACGTGCTGCCTACCGCAAGATGAAACAGAACCTGTGGTGGGCGGCGGGGTACAACTTGATTTCG
GTGCCGCTTGCCGCCGGTGTGCTCGCTCGCGTCGGGTTCGTGCTGCCGATGTCAGTCGGAGCGATTCTGATGTCGCTGTC
GACGATCGTCGTGGCGCTGAATGCCCAGCTCTTGCGTCGCGTCGATCTCAGCCCAGAAGCCAGCACTCGCGCCGTGCTCG
AACGCACGAACTGA

Protein sequence :
MTKPHAGHGHDHGPYSGHEHHERTGHEDHVGHDGHDGHDGHVAQFRRLFWVNLVLAVPVVAFSPMFAMILGYSVPGWATW
LAPVIGTVMYVWGGSPFLTGTVSEIKARKPGMMLLIALGITVAFLASWGATLGLLHHELEFWWELALLVVIMLLGHWIEM
RSLAQTTSALDSLAALLPDEAERVEGETAVTVSPAELRVDDLVIVRPGGSVPADGMIVDGRAAMDESMITGESLPATRSE
GDAVTAGTVATDSGLRVRVTAIGDDTTLAGINRLVADAQNSSSRAQRIADRAAGWLFWFALAAAVITAIVWMLVGDPDAA
VMRTITVLVIACPHALGLAIPLVVSIATERAARSGVLVKDRFALETMRQVDAVLFDKTGTLTKGEPVVTRVVPVGDVDEH
ALLALAAAAEADSEHPLAKAIVAAASDRGLSLAPATGFSSSPAVGVTATVAGHEIRVGGPRLLEETGQPEIGAADAWRAE
GAIILHVVRDGIMIGGLKLADEIRPESRDALAALHRLGVVVVMITGDAAAVAGEVARELGIDRVFAGVRPEDKAAKVAEL
QHEGTAVAMVGDGVNDAPALAQADVGIAIGAGTDVAIASAGVILASSDPRSVLSVIELSRAAYRKMKQNLWWAAGYNLIS
VPLAAGVLARVGFVLPMSVGAILMSLSTIVVALNAQLLRRVDLSPEASTRAVLERTN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 2e-79 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0919 YP_003160880.1 copper-translocating P-type ATPase BAC0629 Protein 1e-106 45
Jden_0919 YP_003160880.1 copper-translocating P-type ATPase BAC0101 Protein 5e-78 42
Jden_0919 YP_003160880.1 copper-translocating P-type ATPase BAC0383 Protein 1e-86 41
Jden_0919 YP_003160880.1 copper-translocating P-type ATPase BAC0079 Protein 2e-98 41
Jden_0919 YP_003160880.1 copper-translocating P-type ATPase BAC0183 Protein 2e-66 41