Gene Information

Name : Jden_0427 (Jden_0427)
Accession : YP_003160395.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 452547 - 453404 bp
Length : 858 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_3525 ABC transporter related

DNA sequence : 
GTGACTAGCGCCCCCACCTTACGTGGACACGCCCTGACAGTTGGGTATGACGCCATGGTCGTGCTTGACGGCCTTGATGT
GACAATCCCCCCAGGTAAAGTCACTGTCATTGTTGGCGCAAACGCGTGCGGGAAGTCCACCCTCCTCAAAGCGCTTGCCC
GGTTGATTCCTGTCACCTCGGGTCACGTCACCATTGATGGCACTGACACTCAGACAATCGCGCGCCGCGCCCTAGCACGC
ACCCTCGGTGTGCTACCGCAGCACCCCACAGCCCCTGACGGGGTCACCGTTGCTGACCTTGTTGCCCGCGGCCGCCACCC
TCACCGTGGCCTGTTCTCCCGGTGGACTGACATTGACGATGCGGCCGTCACCTATGCACTGACCGTCACCGCGACCCTCG
ACCTCGCCCACCGGCCCATCTCAGAACTTTCCGGGGGCCAAAAACAACGGGTGTGGATCGCCATGATCCTCGCCCAAGAC
CCACAACTCATGTTGTTGGACGAACCCACTACCTTCCTCGACCTCCACCACCAAGTCGAAGTCCTTGACCTCCTCAGCGA
ACTCAACACCACCCGCGGAACAACCATCGTCATGGTCCTGCACGAACTGAACCTCGCAGCGCGCTACGCCGACCACCTCA
TCATCATGAAAAACGGGCGCATCATCGCTCAAGGTGCCCCCGCTGACACCCTGAATGCCACGACTGTCCACGACGCATTC
ACCCTCGACGCAGTCGTCATCAACGACCCGGTAACCGCAACGCCACTGATCGTGCCCGGGCCACCTGCGCATCGGCCAGC
AACGACAGCGCCCACCCACCAGCCCGCCGACACACCCACAACCGTGTCCACCCCGTAG

Protein sequence : 
MTSAPTLRGHALTVGYDAMVVLDGLDVTIPPGKVTVIVGANACGKSTLLKALARLIPVTSGHVTIDGTDTQTIARRALAR
TLGVLPQHPTAPDGVTVADLVARGRHPHRGLFSRWTDIDDAAVTYALTVTATLDLAHRPISELSGGQKQRVWIAMILAQD
PQLMLLDEPTTFLDLHHQVEVLDLLSELNTTRGTTIVMVLHELNLAARYADHLIIMKNGRIIAQGAPADTLNATTVHDAF
TLDAVVINDPVTATPLIVPGPPAHRPATTAPTHQPADTPTTVSTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-64 52
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-60 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-60 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-49 44
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-53 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-53 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-53 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 9e-53 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-50 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-49 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-49 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-49 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-49 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0427 YP_003160395.1 ABC transporter BAC0164 Protein 7e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0427 YP_003160395.1 ABC transporter VFG0925 Protein 8e-63 51
Jden_0427 YP_003160395.1 ABC transporter VFG1042 Protein 7e-50 44