Gene Information

Name : Jden_0299 (Jden_0299)
Accession : YP_003160274.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 320345 - 321244 bp
Length : 900 bp
Strand : +
Note : PFAM: ABC-3 protein; transport system permease protein; KEGG: hit:NTHI0477 putative ABC-type chelated iron transport system, permease component

DNA sequence : 
ATGCTTGAGTTTCTTGGTGAACCGTTAGCTTATGAGTTTATGCAGCGCGCTTTTGTGGTGGCGGTTGCTGCGGGTGTGGT
GTGCGCCTTGTTGTCCTGTTGGTTGATTCATGTGGGCTGGTCCTTGATGGGTGACGCGATTTCGCATGCGGTGCTCCCGG
GGATTGTGCTTGCCTACCTGGTGGGGGTCCCTTACGTGGTGGGGGCGTTGGTGTTCGCGTTTCTTGCTGTGGTGTTGATT
GGTTCGGTGCGCTCGACCACGGTGTTGAAAGAGGACACGGTGATGGGGACGGTGTTTACCGCGTTGTTTGCTGTGGGTGT
TGTGCTGTTGTCGCTTTACCCGTCGCAGGTGGATGTGCATCATGTGTTGTTCGGCAACATCCTTGGCATGACGCGAAGTG
ATGCGGTTCAGGTGGTGGTGATCGCGCTGGTGGTTGCGGTTCTACTGGTGGGGGCACGCCGTACGGTGACGTTGTGGGCG
TTTGACCCGGGGTTTGCTGCCGCTGTGGGTGTGAATGTTCGGGTAGTTCGGTGGGTTGTGTTGCTCATGCTTGCGCTGAC
GACAGTGGCGGGGGTGCAGGCTGTGGGGGTGGTCCTTGTCGTGGCGTTACTGATTACCCCGGGGGCGACTGCGTTGTTGT
GGACTCGCCGTTTTCATCACATGTTGTGGATCGCCCCTGTGGTGGCGGTCAGTAGCGGGGTGTTGGGGTTGTATGCCAGT
TATTGGTGGGATGTGTCCTCGGGTGCCGCTATTGTGCTGTTGCTCAGTGCCCACTGTGCGGTCGCGTGGGTTGCGGGCCC
GCGGCAGTTCCTGCGGGCGCGCATCAGTGCGCGACGTCGCAACCCGGTGGGAGCGGCGGGCCGTGCTGCTGTGTCTGTGG
CGGTGCGGTCACAGCAATAG

Protein sequence : 
MLEFLGEPLAYEFMQRAFVVAVAAGVVCALLSCWLIHVGWSLMGDAISHAVLPGIVLAYLVGVPYVVGALVFAFLAVVLI
GSVRSTTVLKEDTVMGTVFTALFAVGVVLLSLYPSQVDVHHVLFGNILGMTRSDAVQVVVIALVVAVLLVGARRTVTLWA
FDPGFAAAVGVNVRVVRWVVLLMLALTTVAGVQAVGVVLVVALLITPGATALLWTRRFHHMLWIAPVVAVSSGVLGLYAS
YWWDVSSGAAIVLLLSAHCAVAWVAGPRQFLRARISARRRNPVGAAGRAAVSVAVRSQQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 5e-21 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-21 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-21 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-21 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 4e-21 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0299 YP_003160274.1 ABC transporter BAC0442 Protein 5e-23 46
Jden_0299 YP_003160274.1 ABC transporter BAC0352 Protein 2e-21 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0299 YP_003160274.1 ABC transporter VFG0528 Protein 2e-21 42