Gene Information

Name : Jden_0297 (Jden_0297)
Accession : YP_003160272.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 318620 - 319570 bp
Length : 951 bp
Strand : +
Note : PFAM: periplasmic solute binding protein; KEGG: yen:YE1900 periplasmic-binding protein

DNA sequence : 
GTGAAAAGCTATCGACCTGCGAAAACACTCCTCAGTGTGATCGTGATAGTCCTCCTCAGCAGCGGCTGCACGGGGAGTTC
AACCCAGCCCGTGCATCAGCAAACCGCCCCTGAACAGGGACAAGAAGCCACCCCAGACATTCGGGTGACCACCACATTCA
CCATCACCGCTGACATGGTCGCCGCCATTGGAGGAGAGCACGTGACTGTTACGTCATTGACCCCACCAGGCGCAGACATC
CACTCCTACGAACCCACGCCCACCGACATCGTCACTGCGCAACATTCTGACCTCATCGTGGAGCATGGGCTTGGGCTGGA
CTCGTGGCTCAGCACAATGACAAACTCCGTGTCCAGTGCGCGCATCACCGTGACGGAGGGAATCACCCCCATCCCGATCG
CCGCAGGAGAGTACGAGGGGGTGCCCAACCCACATGCGTGGCTTTCTGCGGAGAACGCCCACATTTACATTGCGAACATT
GTGAGAGTGCTCAGTGATATTGCGCCAGAGCACGCCGCCGAGTTCGCCGAACGTGGTCGCGCCTACAGCGACCGCATCGA
CACACGGTTTGAGCAGATCCGTGAACTCACCGAAACGATCCCACCGGAGAACCGCACGGTGGTGACGTGTGAAGGGGCGT
TCAGTTACCTCACCGCAGAACTTGGGTTCACTGAAGCGTGGCTGTGGCCGGTCAACGCCGAACGCGAAGCAACCCCACGG
CGGGTTGCCGCCGTCATTGACACAGTGCGTGACCAGGGGGTTCCCACAGTGTTTTGCGAATCAACAGTGGGTGATAAACC
AATGCGCCTGGTCACCGAAGACACAGGTGCATCGTTTGGGGGTGTGCTCTACGTTGATTCGCTGACAGACGCGGCAGGAC
CTGCCCCCACCTACCTTGATTTACTCAGCTACAACGCAACGGTCATCACACAAGGATTGGCAACATCATGA

Protein sequence : 
MKSYRPAKTLLSVIVIVLLSSGCTGSSTQPVHQQTAPEQGQEATPDIRVTTTFTITADMVAAIGGEHVTVTSLTPPGADI
HSYEPTPTDIVTAQHSDLIVEHGLGLDSWLSTMTNSVSSARITVTEGITPIPIAAGEYEGVPNPHAWLSAENAHIYIANI
VRVLSDIAPEHAAEFAERGRAYSDRIDTRFEQIRELTETIPPENRTVVTCEGAFSYLTAELGFTEAWLWPVNAEREATPR
RVAAVIDTVRDQGVPTVFCESTVGDKPMRLVTEDTGASFGGVLYVDSLTDAAGPAPTYLDLLSYNATVITQGLATS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-60 44
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-60 44
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-60 44
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-60 44
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-60 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0297 YP_003160272.1 periplasmic solute binding protein BAC0439 Protein 1e-62 45
Jden_0297 YP_003160272.1 periplasmic solute binding protein BAC0349 Protein 8e-61 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_0297 YP_003160272.1 periplasmic solute binding protein VFG0525 Protein 7e-61 44