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Name : Jden_2248 (Jden_2248) Accession : YP_003162186.1 Strain : Jonesia denitrificans DSM 20603 Genome accession: NC_013174 Putative virulence/resistance : Unknown Product : N-6 DNA methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 2436676 - 2438241 bp Length : 1566 bp Strand : + Note : PFAM: N-6 DNA methylase; KEGG: afr:AFE_2793 type I restriction-modification system, M subunit DNA sequence : ATGGCACGCGCCGCGAAGCCGAAACCGACGAAGACACTCGAGCAGACCCTCTGGGAAGCTGCAGACAAGCTGCGCGGCAA CCAGGAGCCGAGCGAGTACAAGCATGTCGTGCTCGGCCTGGTGTTCCTCAAGTACATCTCCGATCGCTTCGAGGAGCGAC GTGCGACGCTCGAGGCAGAGCTTGCTGCGGAGGGCATCAAGCCGGAGCGACTGCCGGACTTCCTCGAAGACCGCGACGAA TACACCAGTCACAACGTGTTCTGGGTGCCGGAGCTGGCGCGCTGGGGCTACATCCAGTCGGTCGCGAAGCAGCCCGAGAT CGGGCAACAGATCGACCAGGCGATGGATCTCATCGAGAAGGAGAACCCAACGCTAAGGGGTGTGCTGCCACGCAACTATG GACGCGATGGCCTCGACAAGCGCCGTCTGGGCGAGCTGGTAGACCTGATCGGCTCCATCGGGTTCACCGAGACCGACGAC CACGGTGCCGACGACGTGCTGGGCCGGGTGTACGAGTACTTCCTCGGTCAGTTCGCCGGCAAGGAGACCGGCAAAGACGC CGGAGCGTTCTACACGCCGCGTTCGGTAGTCAAGACGCTGGTCGAGATGCTGGAGCCCTACCAGGGGCGCGTCTATGACC CTGCGGCGGGTTCCGGCGGCATGTTTGTGCAGTCGGCTGAGTTCGTGAAAGCTCACGGCGGCAAGCGCACCGACATCTCC GTCTACGGGCAGGAGTTCACGGACACGACCTGGAAGCTCTCCAAGATGAACCTCGCACTGCGAGGTATCGAAGCCGACAT GGGGCCGCGTTCGGCTGACTCATTCACCGATGACCTGCACCCGGATCTGCGGGCCGACTTCGTGATTGCCAACCCTCCGT TCAACGTCTCTGACTGGTGGGATGCGAAGCTCGAGGGCGACCCGCGCTGGCAGTACGGCACCCCGCCGCAGGGCAACGCG AACTTTGCGTGGGTGCAGCACTTCATCTACCACTTGAGCCCGAAGGGCACGGCGGGGTTCGTGCTTGCGAACGGATCCCT GTCGTCGAAGAGCGGTGGTGAGGGCGAGATGCGTCGCAAGCTTGTCGAGGCCGACCTGGTCGACTGCATCGTGGCGATGC CCGACAAGCTGTTCTTCAACACCGGCATCCCCGTCGCGCTCTGGTTCGTCTCCAAGGCCCGGCACGGCAACGGGCACCGC GAACGCCGCAGCGAGGTGCTCTTCATCGACGCCCGAAAGCTCGGCACGATGGAGTCACGCCGTCTGCGCGTGCTGACGGA CGACGACATCGCGAAGATTGCCGATACCTACCACGCCTGGCGCAACCACGACGGAGGCTACGAGGACGTGCCGGGCTTCG CGAAGGCCGCCTCACTAGAAGAGATTGCCAAGCACGACTACGTGCTCACCCCAGGCCGCTACGTCGGCGCTGCCGAGGCT GAGGTTGACGACGAGCCGATCGACGAGAAGATCGAGCGATTGACGAAGGAGCTGTTCGCCGAGTTCGAGCGCGGGCGCGA GCTGGAGGATGAAGTGCGACAGCGTTTGAGTGGGGTGCAGCCGTGA Protein sequence : MARAAKPKPTKTLEQTLWEAADKLRGNQEPSEYKHVVLGLVFLKYISDRFEERRATLEAELAAEGIKPERLPDFLEDRDE YTSHNVFWVPELARWGYIQSVAKQPEIGQQIDQAMDLIEKENPTLRGVLPRNYGRDGLDKRRLGELVDLIGSIGFTETDD HGADDVLGRVYEYFLGQFAGKETGKDAGAFYTPRSVVKTLVEMLEPYQGRVYDPAAGSGGMFVQSAEFVKAHGGKRTDIS VYGQEFTDTTWKLSKMNLALRGIEADMGPRSADSFTDDLHPDLRADFVIANPPFNVSDWWDAKLEGDPRWQYGTPPQGNA NFAWVQHFIYHLSPKGTAGFVLANGSLSSKSGGEGEMRRKLVEADLVDCIVAMPDKLFFNTGIPVALWFVSKARHGNGHR ERRSEVLFIDARKLGTMESRRLRVLTDDDIAKIADTYHAWRNHDGGYEDVPGFAKAASLEEIAKHDYVLTPGRYVGAAEA EVDDEPIDEKIERLTKELFAEFERGRELEDEVRQRLSGVQP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 4e-141 | 55 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 3e-141 | 55 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 6e-140 | 54 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 4e-118 | 50 |
