Gene Information

Name : Jden_2083 (Jden_2083)
Accession : YP_003162024.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2275074 - 2275787 bp
Length : 714 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcy:Bcer98_4006 two component transcriptional regulator

DNA sequence : 
GTGACCCGCATCCTTGTTGTCGAAGATGAAGAGTCATACCGTGAGCCGTTGACTTACCAACTGACCCGGGAAGGGTACGA
CGTTGTGGCGGTAGCAACAGGAACTGAAGCCCTGAGTGCCTACGACGATGAACAACCTGACCTTGTCCTTCTTGACCTGA
TGTTGCCGGGTTTGTCCGGAACGGAGGTGTGCCGGGAGCTACGGTCACGCGGTGATGTCCCTGTCATTATGTTGACGGCA
AAGGACGGCGAGATTGACAAGGTTGTGGGGTTGGAACTTGGTGCAGACGACTACGTGACAAAGCCCTACTCGTTCCGTGA
ATTACTGGCACGGATGCGAGCGGTGCTTCGACGCCACACCAGTGCAAGCGCATCCGAATCCACTGACTTCCGTGATGACG
ACGACGATCAAGTTCTTCACGCTGGCCCTGTAGCGATGGATGTCGAACGGCACGTTGTCACTGTTCGGGGGGACAGCGTG
GCGTTTCCATTGAAGGAGTTTGATCTCCTGGAATACCTGCTCCGTAACGCTGGTCGCGTCCTCACTCGAGGGCAACTCAT
TGACCGCGTCTGGGGGAGCGACTACGTGGGTGACACCAAAACCCTCGACGTGCACATTAAACGGATCAGAGCCAAGATCG
AAGAAGACCCGGGTAGCCCGCAACTCATCCTTACCGTCCGGGGACTTGGCTATAAATTTGCCGATGTGAGCTGA

Protein sequence : 
MTRILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLPGLSGTEVCRELRSRGDVPVIMLTA
KDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTSASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSV
AFPLKEFDLLEYLLRNAGRVLTRGQLIDRVWGSDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGYKFADVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 3e-34 47
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 2e-43 45
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 5e-42 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 5e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 4e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 7e-41 44
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 3e-37 43
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family BAC0197 Protein 1e-27 43
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family BAC0083 Protein 3e-28 42
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family BAC0308 Protein 9e-29 42
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 1e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-34 43
Jden_2083 YP_003162024.1 two component transcriptional regulator, winged helix family VFG0596 Protein 2e-27 41