Gene Information

Name : Jden_2011 (Jden_2011)
Accession : YP_003161952.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 2203612 - 2204442 bp
Length : 831 bp
Strand : -
Note : KEGG: pca:Pcar_1166 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence : 
ATGCAGCACACACACGACACTGCGGTTTCCCCCGCACGTCGGTGGATCGGCCGCGCGCTTCTGCTCACCGCAGTTGTTCT
TGCGCTCGCCCTCACACACCTTGTCTTGACTGCCACCGGCGCGCACGCGGACCTTGTCGATCCGGCTGACCCAGCTGCGC
CAGTTGATGACGGTATTTCCATTGACATTGGTGGAGGCGGCGATGGTCCTACCTCCTCTATTGTTGTGCTCCTGGGTATC
ACGTTGCTGTCAGTGGCGCCTTCGCTGCTGCTGCTCATGACAAGTTTCACGAAGATCCTTGTTGTGCTGTCCATTACCCG
CAACGCGCTGGGCCTCCAGTCCGTACCGCCCAACCAAGTACTCGCCGGAATCGCGTTGTTCCTCTCGATTTTCATCATGG
GGCCGGTCCTGACCTCGATCAATGACATTGCGGTGCAACCATTCCTCGCCGGTGACCTTGACTTTGCTGGTGCACTGGAC
CAAGGGTCAGGACCACTGCGAGATTTCATGCTCGCGCACACGCGAGAATCTGATATTGCGTTAATCACGAGGGCTGCCGA
GGCGGAAAACCCCGCCGACCCCCAGTCTGTTCCGCTGATGACGCTCATTCCCGCGTTCCTTCTGTCTGAGTTGCGTGCCG
CATTCATCATTGGGTTTGTCATCTTCCTGCCCTTTCTTGTGATTGACCTGGTGATCTCCGCATCACTGATGTCTCTGGGA
ATGATGATGCTCCCACCGATCATCATTTCGTTGCCGTTCAAGCTCCTACTGTTTGTCCTTGTCGATGGCTGGTCGCTGAT
CGTGACCGCGCTCATAGGCAGTTACCGGTAA

Protein sequence : 
MQHTHDTAVSPARRWIGRALLLTAVVLALALTHLVLTATGAHADLVDPADPAAPVDDGISIDIGGGGDGPTSSIVVLLGI
TLLSVAPSLLLLMTSFTKILVVLSITRNALGLQSVPPNQVLAGIALFLSIFIMGPVLTSINDIAVQPFLAGDLDFAGALD
QGSGPLRDFMLAHTRESDIALITRAAEAENPADPQSVPLMTLIPAFLLSELRAAFIIGFVIFLPFLVIDLVISASLMSLG
MMMLPPIIISLPFKLLLFVLVDGWSLIVTALIGSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-28 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-28 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-27 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 43
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_2011 YP_003161952.1 flagellar biosynthetic protein FliP VFG0044 Protein 6e-26 44
Jden_2011 YP_003161952.1 flagellar biosynthetic protein FliP VFG1773 Protein 2e-21 42
Jden_2011 YP_003161952.1 flagellar biosynthetic protein FliP VFG2455 Protein 6e-19 41