Gene Information

Name : Jden_1908 (Jden_1908)
Accession : YP_003161854.1
Strain : Jonesia denitrificans DSM 20603
Genome accession: NC_013174
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2088548 - 2089432 bp
Length : 885 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2702 ABC transporter related

DNA sequence : 
GTGGGGGTGTCTTCCGTGCATTCGCCTGAACAGCAACCATCCCCAGAGATCACCGGTCTCCTGCAGGGAACCAATCTCAC
CATTGCATACGGCACCCACACGGTTATTCATGACGCGTCCCTTCACCTACAACCAGGGACAGTCACCGCTCTCGTTGGAC
CCAACGGCTCCGGAAAATCCACACTGCTTCGCAGCCTCTCCCGCCTCCACAGCCCCAATCACGGCACTATCACCCTGAAC
AAGACCACCCCCATTAACTCGCTCAGCGCAAAAGAATTTGCTCGTCAGATCACGCTCCTGTCACAAGCGCGCCCCACCCC
TGCGGGCCTGACCGTTCACGACGTTGTGGAATTTGGGCGCCACCCACACCGCCACGGCTGGCGCGGAACAGACCCACACG
GACCCGATGCAGTGAAACGCGCACTTGCCCTCACCGGGATCGCACCACTAGCTCACCACTACGTGGACACCCTCTCTGGC
GGTCAACTCCAACGTGTCTGGTTCGCCAGTGCCCTCGCCCAAAACACCTCAATCCTCCTTCTCGACGAGCCCACCAACCA
CCTCGACCTGCGCTACCAGGTCGAGATACTCCAATTAATGCGCCAACTCGCGGACACCCACAGCATCACCGTTGGGGTCG
TGCTCCACGACCTCAACCACGCCGCAGCGGTCGCTGACACCGTCCTGGTCTTGGACCAAGGCCAGGTCGTCGCCGAAGGC
CCCCCACACCTTGCCTTCACCTCGGACCTACTCACCACCGTGTACGACATTGACGTTGTTGTCACCCACACCACCCCGAC
AACGGTCACGGTGAGCACCCCAACAACGTTGACACTGCGAGCGCAACCACGCGCTCACACCAACCAGCCAGCACCCGTGT
GCTGA

Protein sequence : 
MGVSSVHSPEQQPSPEITGLLQGTNLTIAYGTHTVIHDASLHLQPGTVTALVGPNGSGKSTLLRSLSRLHSPNHGTITLN
KTTPINSLSAKEFARQITLLSQARPTPAGLTVHDVVEFGRHPHRHGWRGTDPHGPDAVKRALALTGIAPLAHHYVDTLSG
GQLQRVWFASALAQNTSILLLDEPTNHLDLRYQVEILQLMRQLADTHSITVGVVLHDLNHAAAVADTVLVLDQGQVVAEG
PPHLAFTSDLLTTVYDIDVVVTHTTPTTVTVSTPTTLTLRAQPRAHTNQPAPVC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-35 45
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-30 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-31 43
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-31 43
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-31 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_1908 YP_003161854.1 ABC transporter BAC0164 Protein 1e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Jden_1908 YP_003161854.1 ABC transporter VFG1042 Protein 9e-36 45
Jden_1908 YP_003161854.1 ABC transporter VFG0925 Protein 2e-36 45