Gene Information

Name : Dbac_3226 (Dbac_3226)
Accession : YP_003159717.1
Strain : Desulfomicrobium baculatum DSM 4028
Genome accession: NC_013173
Putative virulence/resistance : Virulence
Product : Fis family sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3657736 - 3658743 bp
Length : 1008 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_2959 Fis family transcriptional regulator

DNA sequence : 
ATGACATTTGATACGTGTGGAATAATTGGAAAGAGTTCCGCCTTGCAAGAGGTATTTCGGATCCTCGCCAAAGTGGCCCC
TTCGGACAGCACCGTCCTGGTCACGGGGGAATCCGGTACCGGCAAGGAACTCCTGGTCCGCGCCCTGCATCGCAACAGCA
CGCGGGTGGACAAGCCTTTCGTGCCCATCAATTGCGGGGCCATCCCCCGCGAACTGCTTGAATCCGAGCTCTTCGGGCAC
GAAAAAGGCGCTTTCACGCATGCCATCCGGACCAAGATAGGCCGCTTCGAGATGGCCCATGGCGGCACGGTGTTCCTGGA
TGAAATAGGGGAGATGGACCTGTCACTGCAGGTCAAAATCCTGCGCGTGCTGCAGGAGCGGGAGTTTGAGCGAGTCGGAG
GCGGCAAGACCATCAAGACCGACGTGCGCGTGGTCGCGGCGACCAACCGCGACCTGGAAGAGGAAGTCCGCAAGGGCTCC
TTCCGCGAAGACCTCTTTTACCGTCTGAACGTCATCCCCATCGCCCTGCCCCCACTGCGCGACCGCGGCGAGGACGTGCT
GGTCCTGGCGCGTCATTTCCTGAAGCATTTCTGCGCAAACCGCCGACAATGCGTTCTTGAGATGGCCGATGACGCACGAG
ACATCCTGGCCCGCTATTCCTGGCCCGGCAACGTGCGCGAACTGGAAAACTTCATGGAACGCATGTCCATCCTTTGCGAT
GCCGATCGCATCGGCATCTTCGACCTGCCCGATAAGATCCTGCGCGAAACCGGAATCGAGGTGCCCAAAAGGCCCGTGCC
CGCAGTGGACGCAGGCTTTCGCTGGCCGGAACTCCAGGACTTGCGGGACCAGCAGCTTGGCCTCAAAGAATTCCTGGATC
AGGTCGAGGAGCGGCTTTTGAGCGAAGCCCTGGGGGAAGTGGACGGGGTCAAGAACAAGGCCGCCGAAGTTTTGGGCATC
AAGCGGACCACCCTCATAGAGAAACTCAAAAAAAAGAACATGTTATAA

Protein sequence : 
MTFDTCGIIGKSSALQEVFRILAKVAPSDSTVLVTGESGTGKELLVRALHRNSTRVDKPFVPINCGAIPRELLESELFGH
EKGAFTHAIRTKIGRFEMAHGGTVFLDEIGEMDLSLQVKILRVLQEREFERVGGGKTIKTDVRVVAATNRDLEEEVRKGS
FREDLFYRLNVIPIALPPLRDRGEDVLVLARHFLKHFCANRRQCVLEMADDARDILARYSWPGNVRELENFMERMSILCD
ADRIGIFDLPDKILRETGIEVPKRPVPAVDAGFRWPELQDLRDQQLGLKEFLDQVEERLLSEALGEVDGVKNKAAEVLGI
KRTTLIEKLKKKNML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAT96161.1 HrpS Virulence T-PAI Protein 8e-39 41
hrpS AAT96215.1 HrpS Virulence T-PAI Protein 8e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dbac_3226 YP_003159717.1 Fis family sigma-54 specific transcriptional regulator BAC0467 Protein 4e-65 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dbac_3226 YP_003159717.1 Fis family sigma-54 specific transcriptional regulator VFG1214 Protein 1e-57 41