Gene Information

Name : Dbac_3032 (Dbac_3032)
Accession : YP_003159523.1
Strain : Desulfomicrobium baculatum DSM 4028
Genome accession: NC_013173
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 3429867 - 3431213 bp
Length : 1347 bp
Strand : +
Note : KEGG: dvl:Dvul_2671 flagellar protein export ATPase FliI; TIGRFAM: ATPase FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: ATPase AAA

DNA sequence :
ATGACCGCTGACCTGGACGGCACCCTGCATCTGCTGGCCGGTCTGCAGCCAGCGCAAGCCTACGGCAAGGTGACCAAGGT
CGTGGGGCTTGTGGCCGAGGGACGGGGCATCAAGGCCCCGCTCGGCTCTGTCTGCCAGCTTCTGCCTGACGATACCGGCA
AACAGGTCATCAACGCCGAGGTGGTCGGTTTTCGCGACGACGTCATGCTACTCATGCCCTATGGCGAAATGCGCGGCATC
CGCCCGGGGAGCCTCATCCGCAACACCAGCACCCCGCCTGTTTTCCCGGTCGGCAATCGCTACCTCGGGCAGGCAGTGGA
CGCCTTCGGGCAGTCCCTTGATCCGGAAAAATCCATTTTTCCGGCCCGCTACAACCCGTTGCACGCCGACCCGCCAAATC
CATTGACCAGACCGCGCATCACCGAACCCCTCGACGTCGGGGTCCGAGCAGTCAACGGCCTTTTGACCCTGGGCAAGGGG
CAGCGCGTCGGAATCATGGCCGGTTCGGGGGTGGGCAAAAGCACCCTCATGGGCATGTTTGCCCGGTATACGTCGGCCGA
GGTCAACGTCATCGGGCTTATTGGCGAACGTGGCCGTGAAGTCGTGGATTTTATCGAAAAAGACCTGGGACCGGAAGGTT
TGGCCAAATCCGTGCTCATCGTGGCCACCTCGGACCAGGGCCCGCTGGTGCGAATGCGCGCGGCCTATGCGGCCACGGCC
ATGGCGGAATTTTTTCGTGACGAGGGTAAAGACGTGCTGCTCATGATGGACTCGGTAACCCGCTTCGCCATGGCGGCCCG
CGAGGTCGGCCTTGCGGCCGGCGAACCGCCCACCACCCGGGGATACACGCCGACGGTCTTCTCGCACCTGCCGCGCCTGC
TCGAACGCGCCGGGCGCTCGTCCAAAGGGAGCATCACCGGCATTTACACCGTGCTGGTTGAAGGCGACGACTTCAACGAA
CCCGTGGCCGACGCGGTCCGCTCCATCCTCGACGGTCACATCGTGCTGACGCGAGACCTCGCCGATCAGGGGCACTACCC
TTCCATCGACGTGTTAAAAAGCGTCAGCCGACTGGCGCCCGACGTCACCCCAGCGCCCGTCATCGCCGCCGGGCGTGACC
TGATCCGCATGATGGCCACCTTTCAGCGGGTCGAGGACATGGTCAACATCGGGGCCTACGCGGCCGGTTCGAATCCGGAA
ATCGACCAGGCCCTGAACATGGTCCATCCTATCCGCGCCTTCCTGCAGCAGAGCGTCGAAGAACGCTCCACCCTGGATCA
GGCTTTTGAGGACCTCAAAAAGCTCACGGGCAGAAATCTTCCCAAATCCGTCAAACCCCGCACTTAA

Protein sequence :
MTADLDGTLHLLAGLQPAQAYGKVTKVVGLVAEGRGIKAPLGSVCQLLPDDTGKQVINAEVVGFRDDVMLLMPYGEMRGI
RPGSLIRNTSTPPVFPVGNRYLGQAVDAFGQSLDPEKSIFPARYNPLHADPPNPLTRPRITEPLDVGVRAVNGLLTLGKG
QRVGIMAGSGVGKSTLMGMFARYTSAEVNVIGLIGERGREVVDFIEKDLGPEGLAKSVLIVATSDQGPLVRMRAAYAATA
MAEFFRDEGKDVLLMMDSVTRFAMAAREVGLAAGEPPTTRGYTPTVFSHLPRLLERAGRSSKGSITGIYTVLVEGDDFNE
PVADAVRSILDGHIVLTRDLADQGHYPSIDVLKSVSRLAPDVTPAPVIAAGRDLIRMMATFQRVEDMVNIGAYAAGSNPE
IDQALNMVHPIRAFLQQSVEERSTLDQAFEDLKKLTGRNLPKSVKPRT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-93 49
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 7e-93 49
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-93 49
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-93 49
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-93 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-92 49
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 1e-93 49
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-86 49
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-90 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-90 48
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-76 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-76 48
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-78 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-80 46
escN CAC81862.1 EscN protein Virulence LEE II Protein 5e-81 45
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-81 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 5e-80 45
escN AAC38383.1 EscN Virulence LEE Protein 9e-80 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 5e-80 45
escN AAC31513.1 L0034 Virulence LEE Protein 4e-80 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 8e-81 45
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 4e-80 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 7e-81 45
escN AAK26715.1 EscN Virulence LEE Protein 1e-80 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 4e-81 45
escN AAL57542.1 EscN Virulence LEE Protein 1e-80 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-67 45
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-70 44
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 9e-79 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 1e-79 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-78 44
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-78 44
unnamed AAL06369.1 EscN Virulence LEE Protein 7e-79 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 8e-72 44
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 7e-73 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 5e-73 44
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-72 43
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-72 43
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-72 43
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-73 43
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-72 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-67 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-67 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 1e-65 41
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-65 41
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-65 41
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-65 41
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 7e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG2331 Protein 9e-86 50
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0048 Protein 6e-88 50
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0390 Protein 3e-89 50
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0192 Protein 4e-89 48
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG2499 Protein 2e-89 48
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG2144 Protein 2e-87 47
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG1254 Protein 3e-89 46
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0812 Protein 2e-80 45
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0730 Protein 5e-80 45
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0515 Protein 8e-73 43
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG1778 Protein 1e-65 42
Dbac_3032 YP_003159523.1 FliI/YscN family ATPase VFG0555 Protein 5e-66 41