|
Name : Ccur_05820 (Ccur_05820) Accession : YP_003150981.1 Strain : Cryptobacterium curtum DSM 15641 Genome accession: NC_013170 Putative virulence/resistance : Virulence Product : nucleoside-diphosphate sugar epimerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 682954 - 684795 bp Length : 1842 bp Strand : + Note : PFAM: Polysaccharide biosynthesis protein DNA sequence : ATGGAGATCCGTTTCACTAAGAGGACGGCACTTTTAATCGCGTGTGATATCGCCGCTACGTTCCTCTCGTATTTCTTCGC TTCACTTATCACCGGTCTTGCCGATGAAGTGTTTGCTACTCATGAGATTTATTTCTTGCTCGGTGTCGCCGTAGTTATCA ACCTTGGTTTTTTTGCCGCTTTCAGGCTGTATAACGACTTATGGGAATATGCTTCGGTCGACGATGCCCTGCGTATCACA TTCACCGTAGGGCTTTCTACCCTAGTAACAGCAGTGTTCCTTTGGCTTGCTGGCCAATGGATTCCCATCCGCGTGTATGT GGCTGCCCTGATTATCATGGTGTTTTTCGTGGGCGGTTCGCGCATGTTTTTCCGCGTTCTCCGCAGCAAACGTCGTGAAA TCGAGCGCGCTCATGCCGATGAAGAACGTCCTCGTACGCTTATCGTTGGTGCTGGCGAAACCGGATCATTAGCAATTATG CGCATGGCATCAAAAGACCCGCAGATGCCGGGCGAACCTATTGTCGCTGTTGACGATGATAAAAAGAAGCGCAACTTGCG TGTGCATGGCGTGCGTGTAGCAGGAACCAGCGAAGACATCATCGAACTGGTTGAGCGCTTTGGTATCGAACAGATTGTCG TAGCTATTCCGTCGGCATCTATTAACGACCGCAAGCGCATCTATTCCATCTGCACGCAAACTACTTGCCAGCTGCGTACG TTACCTAACGTACGCGAGCTCAAACTTGATGAGATCAATGATATTGCCCTGCGTGATGTTAATGTAGCTGACTTACTCGG GCGCGAAGAGGTTGTGCTAAACACACGCTTGGTAAGCGGTTACATTGCGGGCAAGACCATTCTTGTTACGGGTGGCGCTG GCTCGATTGGTTCAGAGCTTTGTCGTCAGATGTGCCCGGTGGCACCAGCCCGTATTGTCGTGTTCGACATGTGGGAAAAC GATGCCTATTTGCTTAAGCGTTCTATCCAAGAGCAGTACGACGACATTGATGTTCAGGTTGAGATTGGTAACATCTGCGA CGAATCGCGCCTGCGTGACGTATTTGAAAAGTATCATCCTGCTGCCGTTTTTCATGCAGCTGCTCATAAGCACGTGCCGC TTATGGAAATGTGTCCACGCGAAGCGATACAAAATAATATTTTTGGCACGCTTAATACCGTGCGCTTGGCTCATGAATTT GGCGTTGCCCGTTTCATTTTTATTTCAACAGATAAAGCTGTTAACCCCACGTCAGTTATGGGTGCTACCAAGCGCATGGG CGAGATGATCATCCAACATTATGCGCAGAAGTCCAATACGGTGTTTGCTGCCGTGCGCTTTGGTAATGTGCTCGGTTCAA ATGGCAGCGTTATTCCCATTTTCAAAAAGCAGATTAAAGAAGGTGGGCCGGTAACGGTTACTGATCCTGGTATCGAGCGC TTCTTTATGACCATACCCGAAGCATCTCGTTTGGTTATACAGGCCGGTGGTATGGCTACTGGTGGTGAGATATTTATTCT TGATATGGGCGAGCCGGTAAAAATTGTCGATCTGGCACGCGCGCTTATTCAGCTGTCTGGTCTTGAGGTGGGTAAAGATA TCGAAATCGTCTACACGGGTTTACGTCCTGGCGAAAAAATGTACGAAGAGCTGCTGATGAATGAGGAAAATACGCTTCCT ACCAAACTATCAGGCATTATGATTTCCACCGGTCGAGAAGTCAGTTTTGAAGAGGTTGAGGCGAAGCTTGTTTCGCTGAA AGAATCAATGAGTGCCGATGACGCGACCGCTTTGCGTGTACTCGAACAGGCTGTTCCAACGTATACGATTACAAAAAATT AA Protein sequence : MEIRFTKRTALLIACDIAATFLSYFFASLITGLADEVFATHEIYFLLGVAVVINLGFFAAFRLYNDLWEYASVDDALRIT FTVGLSTLVTAVFLWLAGQWIPIRVYVAALIIMVFFVGGSRMFFRVLRSKRREIERAHADEERPRTLIVGAGETGSLAIM RMASKDPQMPGEPIVAVDDDKKKRNLRVHGVRVAGTSEDIIELVERFGIEQIVVAIPSASINDRKRIYSICTQTTCQLRT LPNVRELKLDEINDIALRDVNVADLLGREEVVLNTRLVSGYIAGKTILVTGGAGSIGSELCRQMCPVAPARIVVFDMWEN DAYLLKRSIQEQYDDIDVQVEIGNICDESRLRDVFEKYHPAAVFHAAAHKHVPLMEMCPREAIQNNIFGTLNTVRLAHEF GVARFIFISTDKAVNPTSVMGATKRMGEMIIQHYAQKSNTVFAAVRFGNVLGSNGSVIPIFKKQIKEGGPVTVTDPGIER FFMTIPEASRLVIQAGGMATGGEIFILDMGEPVKIVDLARALIQLSGLEVGKDIEIVYTGLRPGEKMYEELLMNEENTLP TKLSGIMISTGREVSFEEVEAKLVSLKESMSADDATALRVLEQAVPTYTITKN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-83 | 48 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-86 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ccur_05820 | YP_003150981.1 | nucleoside-diphosphate sugar epimerase | VFG1300 | Protein | 7e-89 | 49 |
| Ccur_05820 | YP_003150981.1 | nucleoside-diphosphate sugar epimerase | VFG0029 | Protein | 9e-74 | 42 |
