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Name : lysS (Ksed_24660) Accession : YP_003150196.1 Strain : Kytococcus sedentarius DSM 20547 Genome accession: NC_013169 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2546525 - 2548087 bp Length : 1563 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGACTTCTGATCCCGCCGCTCCGCAGAACCCCTCGACGTCGCCCGACGGTGCCGTCGAGAAGCCCCTGGCCGCCGACGA GCTGCCCGAGCAGATGCGGATCCGCCGGGAGAAGCGTGCCGCCGTGCTGGATGCGGGCGGTCAGGCCTACCCGGTGGAGG TGCCGCGGACGCACTCCCTGGAGGAGGTCCGCGAGCAGTGGGGCCACCTGGAGACCGGGGAGGAGACGCAGGACGTCGTC TCGGTGACCGGGCGCGTGGTGTTCTCGCGCAACACCGGCAAGCTCTGCTTCGCCACCCTGCAGGCCGGTACCGGGGAGCG CCTCCAGGCCATGCTGTCCCTGGCCGAGGTGGGCCAGGAGGCCCTCGACGAGTGGAAGTCCCTCATCGACCTCGGCGACA TCGTGTCGGTCACCGGTCGGGTCATCTGCAGCCGCCGCGGCGAGCTGTCGGTCATGGCCACTGACTGGCAGCTGGCCAGC AAGGCCCTGCGCCCCCTGCCCACCCTGCACAAGGACCTGTCCGAGGAGCAGCGCGTCCGCCAGCGGTACGCGGACCTCAT CGTGCGTGACGAGGCCCGGCGCATGGTGCTCACGCGCTCGCTGATCACCTCCACGGTGCGCCGCTTCCTCGAGGAGCGCG GCTACGTCGAGATCGAGACCCCGGTCCTGCAGCTCATCCACGGTGGCGCCCTGGCCCGACCGTTCACCACCCACCTCAAC GCCTTCAACCAGGACATGACCCTGCGCATCGCGCTGGAGCTCAACCTCAAGAAGGCCGTCGTGGGCGGGGTGGAGAAGGT CTTCGAGATCGGCCGCATCTTCCGCAACGAGGGCGTGGACTCCACCCACAGCCCCGAGTTCACGATGCTGGAGGCCTACG AGGCCTGGGGCGACCAGACCACCATGGCCGAGCTCATGCAGGAGATGTACCTGGTGGTGGCCGATGCCCTCATCGAGGCC GGCCTGCTCGAGTCGCGCGTGCTGAGCACCCCCGCCGGGGAGATCGACCTCGACGGCGAGTGGCGCTGGCTGCCGGTGTA CGAGGGCGTGTCCGAGGCGGTCGGCGCCTCGGTGACCCCGGAGACCGACGAGGCCACGCTGCGCGAGCTCGCGGCCCGCC ACGAGGTGGAGCTCGACCCCGCCTGGGGTGCGGAGAAGATCGTGCTCGAGCTGCTCTCGGAGCTGGTCGAGCCCACACTG GTGCAGCCGACCTTCCTGTGCGACTACCCACCCTCGGCGCAGCCGCTGGCGCGTCCGCACCGCAGCAAGCCGGGCCTCAT CGAGGCGTGGGACCTGATCATCGGCGGGGTGGAGCGTTCGACGGCCTTCTCCGAGCTGATCGACCCCATCGTGCAGCGGG AGGTGCTGACAGAGCAGTCCCTCGCCGCCGCGGCGGGCGACCCCGAGGCGATGCAGTTGGACGAGGACTTCCTGCGGGCG CTGGAGTACGGCGCCCCGCCGATGGGAGGAATGGGTTTCGGTCTCGACCGCATGGTCATGCTGTTCACCGGCGTGGGTAT TCGCGAGACCATCCTGTTCCCCCACACCAAGCCGGAGGCATGA Protein sequence : MTSDPAAPQNPSTSPDGAVEKPLAADELPEQMRIRREKRAAVLDAGGQAYPVEVPRTHSLEEVREQWGHLETGEETQDVV SVTGRVVFSRNTGKLCFATLQAGTGERLQAMLSLAEVGQEALDEWKSLIDLGDIVSVTGRVICSRRGELSVMATDWQLAS KALRPLPTLHKDLSEEQRVRQRYADLIVRDEARRMVLTRSLITSTVRRFLEERGYVEIETPVLQLIHGGALARPFTTHLN AFNQDMTLRIALELNLKKAVVGGVEKVFEIGRIFRNEGVDSTHSPEFTMLEAYEAWGDQTTMAELMQEMYLVVADALIEA GLLESRVLSTPAGEIDLDGEWRWLPVYEGVSEAVGASVTPETDEATLRELAARHEVELDPAWGAEKIVLELLSELVEPTL VQPTFLCDYPPSAQPLARPHRSKPGLIEAWDLIIGGVERSTAFSELIDPIVQREVLTEQSLAAAAGDPEAMQLDEDFLRA LEYGAPPMGGMGFGLDRMVMLFTGVGIRETILFPHTKPEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 3e-118 | 50 |
