Gene Information

Name : Ksed_22100 (Ksed_22100)
Accession : YP_003149958.1
Strain : Kytococcus sedentarius DSM 20547
Genome accession: NC_013169
Putative virulence/resistance : Virulence
Product : cobalamin/Fe3+-siderophore ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2288058 - 2288879 bp
Length : 822 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGACCGCTCCGACCGACGCACGCCTGGTCTGCCGCGACCTGTCGCTCTCCTACGGCGGTCCCGACGTGGTGCGCGGCGT
CACGCTGGAGGTCCCCGACGGCCGGATCACCACCCTGGTGGGCGCCAACGGGTGCGGGAAGAGCACCCTGCTGCGCGGCC
TGGTGCGGTTGCTGCGCCCGACCTCCGGGCAGGTGCTGCTCGACGGTGACGACCTGCACCGCATCCCGACCCGCCAGGTG
GCCACCACCATCGGGCTGCTGCCCCAGCAACCCCTGGTGCCCGCGGGGCTGACCGTGGCCGAGCTGGTCTCCCGCGGGCG
GCACCCGCACCGCGCGGCGTGGCGCCCCCCATCGAGGGCGGACCACGCCGCCGTGGCCGAGGCGATGGCGCGAACCGACA
CCCTCGCGCTAGCCGACCGGCCGGTGGAGGCGCTCTCCGGCGGGCAGCGGCAACGGGTGTGGATCGCCATGGCGCTGGCG
CAGCAGACCGACATCCTGATGCTGGACGAGCCGACGAGCTTCCTGGACCTCGCCCACCAGGTGGACGTGCTGGAGCTCGT
GGAGGAGCTGAACGCCGAGCGGGGCACCACCGTGGTGATGGTGCTGCACGACCTGAACCTGGCGGCGCGGGTCTCCGACC
ACCTCATCGCGATGCGCCAGGGCGAGGTGGTGGCCTGCGGGACCCCACGGGAGGTCATCACCGCCCGGACGGTGCAGGAC
GTGTTCGGGCTGGACGTGCTGGTGGTGGACGACCCGGTGACCGGGACGCCGATGGTGGTGCCCGAGGGCCGCCGGCGGGG
TCCGACGCAGACCTCGCATTGA

Protein sequence : 
MTAPTDARLVCRDLSLSYGGPDVVRGVTLEVPDGRITTLVGANGCGKSTLLRGLVRLLRPTSGQVLLDGDDLHRIPTRQV
ATTIGLLPQQPLVPAGLTVAELVSRGRHPHRAAWRPPSRADHAAVAEAMARTDTLALADRPVEALSGGQRQRVWIAMALA
QQTDILMLDEPTSFLDLAHQVDVLELVEELNAERGTTVVMVLHDLNLAARVSDHLIAMRQGEVVACGTPREVITARTVQD
VFGLDVLVVDDPVTGTPMVVPEGRRRGPTQTSH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-60 56
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-47 51
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-52 51
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-51 47
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-51 47
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-51 47
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-51 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-47 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-47 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-47 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-47 46
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-31 43
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-54 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-54 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ksed_22100 YP_003149958.1 cobalamin/Fe3+-siderophore ABC transporter ATPase BAC0164 Protein 2e-47 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ksed_22100 YP_003149958.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG0925 Protein 5e-57 52
Ksed_22100 YP_003149958.1 cobalamin/Fe3+-siderophore ABC transporter ATPase VFG1042 Protein 2e-47 51