Gene Information

Name : Ksed_21520 (Ksed_21520)
Accession : YP_003149904.1
Strain : Kytococcus sedentarius DSM 20547
Genome accession: NC_013169
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2226876 - 2227544 bp
Length : 669 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
GTGCCCCACATCCTGATCATCGAGGACAACGACCGGATTGCCTCCTTCATCGACAAGGGGCTGCGTGCCGCCGGATACCA
GACCGAGGTGGTCGGCGACGGCCGCACCGGACTGACGCTGGCCATGCACGGCGGCTTCGACCTCGTGGTGCTCGATCTGG
GCCTGCCCGGCATGGACGGCACCGACCTGCTGGAGAACCTGCGCGGGCAGGGCGTCTCGGTGCCCGTCGTGGTCCTCACC
GCCCGGGACACGGTGGAGGACACCGTCTCCGCGCTGGAGGGCGGCGCGAACGACTACATGACCAAGCCCTTCCAGTTCGC
CGAGCTGCTGGCCCGCGTGCGGGTCCGTCTGGCCGACACCACCGAGGTGCCCACGGCGAAGGACGGCATGGTCGTGGAGG
CCGGCGGCCTGGCCCTGGACCACCGCACCCGCGAGGTCCGCGGCGACGGCGTGCAGACCTCCCTGACCTCCCGCGAGTTC
GGCCTGTTGGCCACCTTCATGCGCCACCCGGGCCAGGTGCTGAGCCGCCAGCAGCTGCTGGCGGAGGTGTGGGGCGTGGA
CCACGACCCCCACTCCAACGTGGTCGACGTCTGCGTGCGCCAGCTGCGCACCAAGGTGGGCAGCGACCACATCGAGACGG
TCCGCGGCGTCGGCTACCGCTTCCGCTGA

Protein sequence : 
MPHILIIEDNDRIASFIDKGLRAAGYQTEVVGDGRTGLTLAMHGGFDLVVLDLGLPGMDGTDLLENLRGQGVSVPVVVLT
ARDTVEDTVSALEGGANDYMTKPFQFAELLARVRVRLADTTEVPTAKDGMVVEAGGLALDHRTREVRGDGVQTSLTSREF
GLLATFMRHPGQVLSRQQLLAEVWGVDHDPHSNVVDVCVRQLRTKVGSDHIETVRGVGYRFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-31 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-29 43
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 1e-29 42
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 6e-28 41
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-29 41
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 7e-34 41
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 5e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-31 44
Ksed_21520 YP_003149904.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 2e-28 42