Gene Information

Name : Ksed_17610 (Ksed_17610)
Accession : YP_003149538.1
Strain : Kytococcus sedentarius DSM 20547
Genome accession: NC_013169
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1834076 - 1834828 bp
Length : 753 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGGTTCTTCATCAGGCACCGGCCCCTCCTGCGTCGACGATTCACGCCGAGCAGATCGTCAAGATCCCCCCCGGCAGCGT
CGGGCAGCCTCCCATCCTTCGGGGTGTCTCTCTGGACCTGAGCGGTGGTGGACTCACCGCCGTGGTCGGCCCCAGCGGTG
CGGGCAAGACATCCTTGCTGTATTGCCTCAGCGGCCTCGACAAGCCGGACCAGGGGCAGGTCTGGGTCAACGGAACGGAT
CTGTACTCGCTCGGCGACGAGAAGCGCACCCGGTTCCTTCGTGGGACGGCGAGTTTCGTGTTCCAGCAGTACAACCTCAT
CGGCTACCTCACCGTGGAGGAGAACGTCCGGCTCCCTCATGCCTTGGCCAAGCGGAGAATCGATGCCGACGCGGTGACGG
ACATCCTCGCCCGGTTCGGTCTGACGGAGAAGCGTTCGGCGCGGGTGAGCACGCTGTCCGGGGGTGAGCAGCAGCGGGCG
GCTCTATGCCGGGCGATCCTGATGCGGCCGTCGGTGATCTTCGCCGATGAGCCCACCGGCGCGCTCGACACCGCCAATAC
CGGTATCGTGCTGCGGGTCTTGCGTGAGCTGGCCACCCAGGACTGCTCGGTCGTGATGGTCACCCACGACGTCGAGTCCG
CCGCGTTGGCCGATCGGATCGTGTTCATGCGCGACGGGATGATCGCCCATGTCACCGGGCGGCTCGGCGTGGACGAGATC
CTCCACACCATGGCACGGCTCGGAGGCAGGTGA

Protein sequence : 
MVLHQAPAPPASTIHAEQIVKIPPGSVGQPPILRGVSLDLSGGGLTAVVGPSGAGKTSLLYCLSGLDKPDQGQVWVNGTD
LYSLGDEKRTRFLRGTASFVFQQYNLIGYLTVEENVRLPHALAKRRIDADAVTDILARFGLTEKRSARVSTLSGGEQQRA
ALCRAILMRPSVIFADEPTGALDTANTGIVLRVLRELATQDCSVVMVTHDVESAALADRIVFMRDGMIAHVTGRLGVDEI
LHTMARLGGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-38 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ksed_17610 YP_003149538.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-30 41