Gene Information

Name : Shel_01920 (Shel_01920)
Accession : YP_003142611.1
Strain : Slackia heliotrinireducens DSM 20476
Genome accession: NC_013165
Putative virulence/resistance : Virulence
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 234091 - 234792 bp
Length : 702 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGGCATTTGTTGAATTCCGCGACGTGCGCAAAATATATACGATGGGCGAGGTGGAAGTGGCCGCGCTCGACGGCATGAC
GTTCGAGATCGAACGAGGCGAACTCGTGGTCATCGTGGGGCCGTCCGGGTCGGGCAAGACCACGCTGCTGAACATGCTGG
GCGGCATGGATTCCTGCACGTCCGGCGACATCCGCCTTGACGGACGCCTGGTCAGCGGCTTTTCCGACAAGGAACTGGTG
CAGTACCGCCGCCACGACGTGGGCTTCGTCTTCCAATTCTACAATCTGGTGCAGAACCTGACGGCGCTTGAGAACGTGGA
ACTGGCAGCCCAGATCTGCAAGAACCCGCTTCCCGCCGAAGAGGTGCTGGAGTTGGTGGGGCTGGGGCATCGCATGGACA
ACTTCCCCGCGCAGCTTTCCGGCGGCGAGCAGCAGCGCGTGGCTATCGCCCGCGCCTTGGCGAAGAATCCGAAACTTCTG
CTGTGCGACGAGCCCACGGGCGCTCTGGACTACAAAACGGGCAAGGCCATTCTCAAACTTCTACAGGAGACCTGCGAAAA
CACCGGCCGCACGGTGGTCCTGGTCACCCATAACTCGGCGTTTTGCGCCATTGCGAACCGGGTGATCCACGTGAAAGAGG
GCCGCGCCGGTGCGGTGGAGATAAACGAGCACCCGGCGTCTGCCGAGGTCATCGACTGGTAA

Protein sequence : 
MAFVEFRDVRKIYTMGEVEVAALDGMTFEIERGELVVIVGPSGSGKTTLLNMLGGMDSCTSGDIRLDGRLVSGFSDKELV
QYRRHDVGFVFQFYNLVQNLTALENVELAAQICKNPLPAEEVLELVGLGHRMDNFPAQLSGGEQQRVAIARALAKNPKLL
LCDEPTGALDYKTGKAILKLLQETCENTGRTVVLVTHNSAFCAIANRVIHVKEGRAGAVEINEHPASAEVIDW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-32 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shel_01920 YP_003142611.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7685735. Protein 2e-65 56
Shel_01920 YP_003142611.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 1e-32 44
Shel_01920 YP_003142611.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-40 43
Shel_01920 YP_003142611.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 5e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shel_01920 YP_003142611.1 antimicrobial peptide ABC transporter ATPase VFG0869 Protein 5e-20 41