Gene Information

Name : Shel_18040 (Shel_18040)
Accession : YP_003144171.1
Strain : Slackia heliotrinireducens DSM 20476
Genome accession: NC_013165
Putative virulence/resistance : Resistance
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2035997 - 2036695 bp
Length : 699 bp
Strand : +
Note : PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain

DNA sequence :
ATGATTTACTACGTCGAAGATGACCAGAACATACGTGAGCTGGCATTGTACGCCCTGTCTTCCCAGGGTTTAGAAGCCTG
TGGCTTCGCTGCTGCCGGCGATTTCAAGAAAGCATGTTCAAAATTACGTCCTGACCTGGTGTTGCTTGACATCATGCTGC
CTGGTGAAGACGGCCTTTCCATTCTCTCCTGGATTCGCAACAACGCGGATATGGCAGAAGTGCCGGTCATGATGCTCACC
GCGAAGGGAACCGAATTCGACAAGGTTTTGGGGCTTGATTCCGGGGCCGACGACTACCTTGCCAAGCCCTTCGGCATGAT
GGAGCTGGTCAGCAGATGCAAGGCGCTGCTCAGGCGCCCTGCCATGGCCCATCCTGCAGACGGCCGGGATGGAGCCGTGA
CCATCGGTCCGATCTCCCTGTCCGTCAGGGACCACGAGGCCTTCGCCGGCACCGCCGAACTCGACCTGACGCTCAAGGAG
TTCGACCTGCTCCGCAAACTCATGGAAAACCCTGGCCGGGCATTCACCCGCTCGCAACTGCTCAAAGACGTATGGGACGT
GTCGTTTGTGGGAGAAACCCGAACCGTGGACACGCACATCCAGACGCTGCGTCGCAAACTCAACGACGCCTACCCAGGCG
CGGGCAACGCCATAGAAACGATCCGCGGGGTTGGATACAGGTTCTCGAAAGAAGGATAG

Protein sequence :
MIYYVEDDQNIRELALYALSSQGLEACGFAAAGDFKKACSKLRPDLVLLDIMLPGEDGLSILSWIRNNADMAEVPVMMLT
AKGTEFDKVLGLDSGADDYLAKPFGMMELVSRCKALLRRPAMAHPADGRDGAVTIGPISLSVRDHEAFAGTAELDLTLKE
FDLLRKLMENPGRAFTRSQLLKDVWDVSFVGETRTVDTHIQTLRRKLNDAYPGAGNAIETIRGVGYRFSKEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 5e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 2e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 2e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 2e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 1e-41 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene3444. Protein 6e-27 42
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 2e-33 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene2255. Protein 2e-24 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain U35369.1.gene1.p01 Protein 2e-24 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 1e-25 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene2531. Protein 7e-27 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene2239. Protein 2e-27 41
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0596 Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shel_18040 YP_003144171.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0473 Protein 2e-25 41