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Name : Shel_17680 (Shel_17680) Accession : YP_003144136.1 Strain : Slackia heliotrinireducens DSM 20476 Genome accession: NC_013165 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, HsdR family Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 1995629 - 1998736 bp Length : 3108 bp Strand : - Note : PFAM: Type III restriction enzyme, res subunit; Type I restriction enzyme R protein N terminus (HSDR_N); TIGRFAM: type I site-specific deoxyribonuclease, HsdR family DNA sequence : ATGTTTGACGACAAAGCCTCCTTCCGCTACTCTGCCGCCACGATGCCGATGAACGAGGACTTCTTCGAGCAGGTCATCAT CGAGCACCTTCGGGACGAGCACGGCTACGAGTTCCTGCACGGCCCCGACGTGCCGCGCACCACCCCCGACTACCGCGACG TTTTCCTGCCGGCCGTCCTGCCGGACAGTCTAAGGCGCATCAACCCGGGCCTTCCCACAGCCGCCATCGAGCAGGCGGTC CTCAAGATCTCGAACATCGAGGCCGGCGGGCTCTACCAGAAGAACGAGGTGTTCAACGACTACCTGCAGTCGGGCGTTGA GGTGCACTTCTACGACGGAAAGGAGGAGCGGGACGACATCGTCTACCTGCTGGACTTCGATGACCCCGAGAACAACTCCT TCCACGTGGTCAACCAGTGGACCTTCGTGGAGTACTCGCAGAAGCGCCCCGACGTCGTCGTGTTCGTGAACGGCATGCCG CTCGTCGTCTTCGAGCTCAAGAGCCCGTCCCGCGAGGAGACCGACGCGTCGGATGCCTACCTGCAGCTGCGGCAGTACAT GAAACAGATTCCCAGCATGTTCGTGCCGAACGTGTTCTGCGTGATGAGCGACATGAGCGAGACGCGCGTGGGAACCATCA CCGCCGACGAGGACCGCTACGTCTCCTGGAAGAGCGTGGACGGCGACTACTCCGGCACGAAGGGGGCCACATGGAGGACG ATGCTCGACGGCATGATGCCGAAGGCGCGGCTGCTCGACATCGTCAGGAACTTCGTATGCTTCAACGACGACTCGTCCAG GGTCGTCAAGATCCTCGCGGGCTACCACCAGTATTTCGGCGTGACGAAGGCGGCCGACCGGGCCGTGGAGGCGGTGGCGG GCGACGGCAAGATCGGCGTGTTCTGGCACACGCAGGGCTCGGGCAAATCGCTCTCGATGGTCTTCTTCGCCCACCTGCTG CAGGAGCGGCTGGAGAGCCCCACCATCGTGGTCATCACCGACCGAAACGACCTGGACGATCAGCTCTACGGGCAGTTCTG CCGCTGCGCGCCGTTCCTTCGCCAGACGGCCGTGCAGGCGACGAGCCGGGACGGAGCGAACGACAGCACCAGCCTGAAGC GGCTGCTCGTCGGGCGCGAGGCGAACGGCATCGTCTTCACGACGATGCAGAAGTTCATGGACGGCGAGGAGCCTTTGTGC GACCGCAGCAACGTGGTGGTGATGGTTGACGAGGCGCACCGAGGGCAGTACGGGCTCACCGAGCGCATGGACGCAGAGGG CAACGTGCGAGTCGGCGCCGCCCGCGTCGTGCGCAAGGCGCTACCGAACGCGAGCTACATCGGCTTCACCGGCACCCCGA TATCGACCGAGGACAAGAACACCCGCGAGATCTTCGGCGACTACATCGACGTGTACGACATGACCCAGGCGGTTGAGGAC AACGCGACCCGCCCCGTCTACTACGAGAGCCGCGTGGTGGCGCTGAAGCTGGACGAGGCCAAGCTCGCGCAACTCGACGC CGCCTACGCCGAGTTCGCATCCGAGGCCAACGCGGTCAGCGTGGAGAAGGCCAAACGCGACACGGGAGGACTCGACGCAA TATTCGGCGCGCCCGAGACCATCGACGCGCTCTGCCGCGACATCATAGACCACTACGAGAACAACCGCGCCGACATCCTG GCGGGAAAGGCCCTCATAGTCGCGTACAGCAGGCCCGTGGCCATGAAGATCTACTACCGCATGATGGAGCTGCGTCCCGA GTGGAAAGACAAGCTCGGCGTCGTGATGACGATGGGCAACCAGGACCCCGAGGAGTGGTTCGACGTCTGCGGCGGCAAGA CGCACAAGAAGGAGATGGAGCGCCGGTTCAAGGACGACTGCGACCCGCTCAAGATCGCCATCGTCGTGGACATGTGGCTC ACCGGCTTCGACGTGCCGAGCCTCGCCACCATGTACGTGTTCAAGCCTATGAGGGGCCACAACCTCATGCAGGCCATCGC CCGCGTTAACCGAGTGTGCAAGGGCAAGGAGGGCGGCCTGGTCGTGGACTACATCGGCATAGCCCGCGCCCTCAAGCAGG CGATGAAGGACTACACCAACCGCGACCAGTCCAACTACGGCGACATGGACGTAGCGGCCACCGCCTACCCGAAGTTCCTG GAGAAGCTGGACGTGTGCCGCGACCTCATGTACGGCTTCGACTACCGCAAGGCCATCTTCACCGACAGTAAGGCGCAGCT CGCGTCCGCCATCGCAGAGGGCACCGACTGGCTGCTGGAGCCCTCGCGCGAGGAGGACCGCGAGGACTTCATCAAGCAGT GCCAGCTGATGAACCAGGCGCTCAGCCTATGCAAGAGCCTGGTATCCGAGGAGGACCAGCACGAGGCGGCCTACCTCTCC GTCCTGCGCGTGCAGGTGCTGCGGCTGACGGGCCGGCAGGGCTCCGGCGGAGGCGGCATGACCTACGCCGAGTTCAACAA GCGCGTGACCGCCATTCTCGAGCAGACAGTGCAGGCCGACGGCGTCATCGACCTGTTCGAGAAGGACAGCGTGGAGATAT CACTCTTCGACGAGGCGTTCTTGCAGGAGCTCGCCAACATGAAGCAGAAGAACATCGCCGTCGAGAGCCTCAAACGCCTC ATCAAGGAGCGCGTGCGCGCCTATCAGCGCACGAGCGTGGTGAAGGCGGAGAAGTTCAGCGACATGCTGCAGGGCACGCT CAACGCCTACCTGAACGGCATGCTCACCAACGCGCAGGTCATCGAAGAGCTCGTGAACATGGCCAAGGAGATGATGAAGG ACCGCACCGACGCCGAGAAGCTGGGGCTATCCGACGAGGAGATGGCCTTCTACGACGCGATAACCAAGCCGCGGGCCGTG AAGGACTTCTACGACAACGACCAGCTCGTCGCCATCACGCGGGAGCTGACCGAGGCGATGCGCACGAACGCCACCATCGA CTGGCAGCGCAAGGAGTCGGCGCGCGCCGGCATGCGCCGCGCCATCAAGCGGCTTCTGAGGAAGTACAAGTATCCGCCCG AGGGCGCCGATGAGGCCATGACCACCGTCATGGCTCAGTGCGAGCTCTGGGCAGACACCAAGATCTAA Protein sequence : MFDDKASFRYSAATMPMNEDFFEQVIIEHLRDEHGYEFLHGPDVPRTTPDYRDVFLPAVLPDSLRRINPGLPTAAIEQAV LKISNIEAGGLYQKNEVFNDYLQSGVEVHFYDGKEERDDIVYLLDFDDPENNSFHVVNQWTFVEYSQKRPDVVVFVNGMP LVVFELKSPSREETDASDAYLQLRQYMKQIPSMFVPNVFCVMSDMSETRVGTITADEDRYVSWKSVDGDYSGTKGATWRT MLDGMMPKARLLDIVRNFVCFNDDSSRVVKILAGYHQYFGVTKAADRAVEAVAGDGKIGVFWHTQGSGKSLSMVFFAHLL QERLESPTIVVITDRNDLDDQLYGQFCRCAPFLRQTAVQATSRDGANDSTSLKRLLVGREANGIVFTTMQKFMDGEEPLC DRSNVVVMVDEAHRGQYGLTERMDAEGNVRVGAARVVRKALPNASYIGFTGTPISTEDKNTREIFGDYIDVYDMTQAVED NATRPVYYESRVVALKLDEAKLAQLDAAYAEFASEANAVSVEKAKRDTGGLDAIFGAPETIDALCRDIIDHYENNRADIL AGKALIVAYSRPVAMKIYYRMMELRPEWKDKLGVVMTMGNQDPEEWFDVCGGKTHKKEMERRFKDDCDPLKIAIVVDMWL TGFDVPSLATMYVFKPMRGHNLMQAIARVNRVCKGKEGGLVVDYIGIARALKQAMKDYTNRDQSNYGDMDVAATAYPKFL EKLDVCRDLMYGFDYRKAIFTDSKAQLASAIAEGTDWLLEPSREEDREDFIKQCQLMNQALSLCKSLVSEEDQHEAAYLS VLRVQVLRLTGRQGSGGGGMTYAEFNKRVTAILEQTVQADGVIDLFEKDSVEISLFDEAFLQELANMKQKNIAVESLKRL IKERVRAYQRTSVVKAEKFSDMLQGTLNAYLNGMLTNAQVIEELVNMAKEMMKDRTDAEKLGLSDEEMAFYDAITKPRAV KDFYDNDQLVAITRELTEAMRTNATIDWQRKESARAGMRRAIKRLLRKYKYPPEGADEAMTTVMAQCELWADTKI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 2e-180 | 41 |
