|
Name : Coch_0734 (Coch_0734) Accession : YP_003140852.1 Strain : Capnocytophaga ochracea DSM 7271 Genome accession: NC_013162 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 888272 - 889543 bp Length : 1272 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTACAACTAAACACTATTAGAGAAGAAAAAGACCGCGTGCTCACCGGTCTTAAAAAGCGCAACTTTAAAGAGTTGTC TCTCATAGACGATATTATCGCCTTAGACGAAAAACGCCGTAGCACTCAGCTTTCCCTCGATGAAACACTGGCGAAATCCA ATAACCTTTCTAAGGAAATAGGCAACCTCTTCAAAGCAGGCGAAACCGATAAAGCTAATACCCTTAAAGAGCAAACCGCT ACCCTTAAAGAAGATATCAAAACCCTTACCGATACCCTCAACACTACCGTAGAGGAGCTTAACGATTTGCTCTACCGCGT GCCTAATATCCCTAATGAGTTGGTGCCCGAAGGTACTTCCGAAGCCGACAATGTAGTAGTATTCGAGGCAGGCACTATTC CTGATTTAGGTAAAGACGCTCTTCCTCACTGGGAACTCGCCAAGAAGTACGACCTCATCGATTTCGAGTTAGGCGTAAAG CTCACTGGTGCAGGCTTTCCTGTGTACAAAGGCAAAGGAGCAAAACTGCAACGCGCTCTCATTACCTACTTCCTCGACAA GAACACCGAAGCAGGCTATAACGAATACCAAGTGCCTCACGTAGTAAACGAAGCCTCAGGCTATGGCACCGGTCAGTTAC CTGATAAAGAAGGACAGATGTACCACATAGGGGTAGATAACCTCTACCTTATCCCTACCGCTGAGGTGCCTGTGACTAAT ATTTTCCGCGATACCTTGCTCAACGAAAGCGATTTGCCTATCTGCTGTACCGCCTATACACCTTGCTTCCGTCGCGAAGC CGGTAGCTATGGCGCTCACGTACGCGGACTCAACCGCTTGCATCAGTTCGACAAGGTGGAGATTGTACGCATTGAACACC CCGACCGCTCTTATAAAGCACTCGAAGGAATGATAGAACACGTAAAAGGCATTCTCAATGAGTTGAAACTACCTTACCAT ATCTTGCGCCTTTGTGGTGGCGATTTAGGCTTTACTTCAGCAATTACTTACGATTTCGAGGTATATTCCACCGCTCAAGA AAAGTGGTTAGAGATAAGCTCAGTGTCTAACTTCGAAACCTTCCAAGCCAACCGTCTTAAATTGCGTTTCAAGGACGCCG ACGGTAAAAACCGCTTAGCACATACCCTCAACGGTAGTTCACTTGCCCTCCCGCGCGTATTAGCCGGTATTTTAGAAAAC TATCAAACCCCCAATGGTATTGTAGTACCCGAAGTCCTCAGAAAATACACAGGCTTCGATATTATTAATTAG Protein sequence : MLQLNTIREEKDRVLTGLKKRNFKELSLIDDIIALDEKRRSTQLSLDETLAKSNNLSKEIGNLFKAGETDKANTLKEQTA TLKEDIKTLTDTLNTTVEELNDLLYRVPNIPNELVPEGTSEADNVVVFEAGTIPDLGKDALPHWELAKKYDLIDFELGVK LTGAGFPVYKGKGAKLQRALITYFLDKNTEAGYNEYQVPHVVNEASGYGTGQLPDKEGQMYHIGVDNLYLIPTAEVPVTN IFRDTLLNESDLPICCTAYTPCFRREAGSYGAHVRGLNRLHQFDKVEIVRIEHPDRSYKALEGMIEHVKGILNELKLPYH ILRLCGGDLGFTSAITYDFEVYSTAQEKWLEISSVSNFETFQANRLKLRFKDADGKNRLAHTLNGSSLALPRVLAGILEN YQTPNGIVVPEVLRKYTGFDIIN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 9e-72 | 42 |
