Gene Information

Name : Coch_0386 (Coch_0386)
Accession : YP_003140510.1
Strain : Capnocytophaga ochracea DSM 7271
Genome accession: NC_013162
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 493735 - 494481 bp
Length : 747 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_3354 ABC transporter ATP- binding protein

DNA sequence : 
ATGAAAAAAGCAATCATCGACATACGCGATATGAAACGCGAGTTTAAGATGGGTAACGAAATCGTTCACGCCCTGAAAGG
CATCAATCTCACCATTCACGAGGGGGAGTTCGTAACCATTATGGGACCGAGTGGGTCGGGTAAATCAACCTTATTGAACA
TATTAGGTTGTTTAGACCGTCCGTCGTCAGGCGATTACATTTTGGACGGCATCTCGGTGAAAGATATGAGCAAGAACGAA
CTCGCAACAGTACGCAACACCAAGATAGGCTTTATCTTTCAGTCGTACAATCTTTTGGCGCGTACCTCAGCTATCGAGAA
TGTAGAGCTCCCTTTGATGTACAACTCTAAAATCTCGGCTAAAGAACGTCGCGAGCGCGCTATTGAAGCTCTCATCAGCG
TAGGTTTGGAAAGCCGATTGAACCACTTGCCCAGTGAACTCTCGGGCGGACAGCAACAACGGGTAGCCATTGCGCGTTCC
CTTGTAAATCACCCGGTGATACTCCTTGCCGATGAGGCTACCGGTAACCTTGACACTAAAACTTCCTACGAAGTAATGGA
GCTTTTCCAACGCCTTAACGACCAAGGTAGTACGATAGGGTTTGTAACCCACGAGAACGATATAGCCCTTTTCAGCAAGC
GCACTGTTGTACTCAAAGACGGACATATCATCAGTGATAAGGAAGTAACCAATAGACTGAATGCAAAGGAAGAATTGGCA
CAATTACGAATGACAAGTGATGAATGA

Protein sequence : 
MKKAIIDIRDMKREFKMGNEIVHALKGINLTIHEGEFVTIMGPSGSGKSTLLNILGCLDRPSSGDYILDGISVKDMSKNE
LATVRNTKIGFIFQSYNLLARTSAIENVELPLMYNSKISAKERRERAIEALISVGLESRLNHLPSELSGGQQQRVAIARS
LVNHPVILLADEATGNLDTKTSYEVMELFQRLNDQGSTIGFVTHENDIALFSKRTVVLKDGHIISDKEVTNRLNAKEELA
QLRMTSDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Coch_0386 YP_003140510.1 ABC transporter-like protein NC_012469.1.7686878. Protein 3e-56 54
Coch_0386 YP_003140510.1 ABC transporter-like protein NC_008702.1.4606598. Protein 5e-46 50
Coch_0386 YP_003140510.1 ABC transporter-like protein CP001581.1.gene598.p Protein 4e-40 43
Coch_0386 YP_003140510.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Coch_0386 YP_003140510.1 ABC transporter-like protein VFG0869 Protein 2e-21 41