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Name : Coch_2028 (Coch_2028) Accession : YP_003142133.1 Strain : Capnocytophaga ochracea DSM 7271 Genome accession: NC_013162 Putative virulence/resistance : Unknown Product : RNA binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 2426028 - 2428151 bp Length : 2124 bp Strand : - Note : PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: fjo:Fjoh_1021 RNA-binding S1 domain- containing protein DNA sequence : ATGACAAACATTCAATATATAAAAGCCCAAACACAACTACCTGAAAAAGCTATTGAAAACACACTTTCACTATTAACCGA AGGCTGCACTATCCCCTTCATTGCACGCTATCGAAAAGATAGCACTCAGAATTTAGATGAAGCAGCCATTGAGCATATTG CCAAATCCCAAGCTGATTACGACAATATCTGTAAGCGCAAAGAAACAATTCTCTCTTCTATTGAAGAACAAGGAAAGCTT ACAGACGATTTGCGTAAACGTATTGAGAACTCTTTTGAGCTCAATGAATTAGAAGACCTATACTTACCTTATAAAAAACG GCGTAAAACAAAAGCCGATGTAGCCAAAGAAAACGGCTTAGAACCTCTTGCAAAACAGATAATGAGTCAGCGTGTAACCG ATTTGGAACTATTAGCAGGACGTTACCTTTCCGACAAAGTACCTACTGAAGAAGATGCTTTACAAGGGGCTTCGGATATT ATAGCTGAATGGATTAATGAGAATACGTTTATACGTCGCACTCTTCGCCGAATATTCCAGCGCAAAGCAATCATCAGTAG CGAAGTAGCCAAAGGTAAAAACGAAGAGGAAGAAGCTCAGAAATACGCTCAGTATTTCGATTGGGAAGAAGCCCTTAACA AAGCGCCCTCTCACCGTGTATTAGCAATGTTGCGTGCTGAAAAAGAAGGATTTGTAAAACTAAAAGTACAAGTAGATAGT GAAGAAACCTTACCCTTTATGGAAGAAAACATCATAAAGAGTAGGGGAGAAGTAGCCGATTTCTTGAAGAAAACGGTAAA AGACAGCTACAAACGCTTATTAGAGCCTTCTATTTCCAACGAAACACTACAAGAGGCAAAAGATAAAGCCGATGCGAAAG CTATCAGTGTGTTTGCCGAGAACCTCTCACAGTTGTTATTAGCGTCTCCTTTGGGTGAAAAGCGCATTTTGGCTATTGAT CCAGGATATCGTACAGGTTGTAAGGTAGTGTGTTTAGATGAAAAAGGCGACCTTTTGCATCACGATGTTATCTATCCTCA CGCTCCCCAGAATGATATGACTATGGCTACCAAAAAGCTCAGCACAATGGTCTCTCAATACAATATCCAAGCCATTAGTA TAGGCAATGGTACTGCTTCTCGTGAAACAGAGTCGTTTGTAAGAAGTATTGCTTTCCCTAAAAAGGTAGAAGTATTTGTC GTGAGTGAAGCAGGAGCATCAGTCTATTCAGCTTCTAAAATAGCTCGCGACGAGTTCCCCGATTACGATGTAACTGTACG TGGTGCAGTATCCATAGGTAGGCGTCTTGCTGACCCATTAGCTGAATTAGTGAAGATAGACCCTAAGAGCATAGGAGTAG GTCAATACCAACACGATGTAAACCAGTCGTTATTGAAAGAGGAGCTCGATGCAACCGTAGTGCGTTGCGTGAACAAAGTA GGGGTAAACCTCAACACAGCAAGCAAATCACTACTCAGTTATGTATCAGGGATAGGAGAGAAGATGGCTGAAAACATAGT AGCTTACCGCTCGGCTAATGGTGCTTTTAGTAAGCGAGAAGACTTAAAAAAGGTACCTCGTTTGGGGGATAAAGTATACC AGCAGGCAGTAGCTTTCTTGCGTGTACATAATAGTGAGAACCCGCTCGACAATTCAGCAGTACACCCCGAAGCCTATCCT ATCATCAAACAAATGGCAAAGCACACGGGTATCTCAGTTGCACAACTTATAGGTAATAAGCAAGCTATTGCCACTATTGA TATTCAAAAGTACAAAACAGATAAGGTGGGTGAACTTTATTTGAAGGACGTATTAAAGGAATTAGAAAAACCAGGGCTCG ACCCTCGTACTACTGCTAAAGCCTTTGCCTTCGACCCTAATGTAAAAACCTTCGATGATGTGCGTGTAGGAATGATATTA CCTGGTATAGTAAACAATATTACTGCCTTTGGTTGCTTTGTGGATATAGGTGTTAAAGAAAGTGGATTGGTACACATCTC TCAACTGAAAGAAGGTTATGTCTCTGATGTAAATGAAGTAGTTAAACTCCACCAACAAGTGCAAGTAAAAGTTATAGAGA AAGACGAAGTGCGTAAACGCATTTCACTAAGTATGGTGTGGTAA Protein sequence : MTNIQYIKAQTQLPEKAIENTLSLLTEGCTIPFIARYRKDSTQNLDEAAIEHIAKSQADYDNICKRKETILSSIEEQGKL TDDLRKRIENSFELNELEDLYLPYKKRRKTKADVAKENGLEPLAKQIMSQRVTDLELLAGRYLSDKVPTEEDALQGASDI IAEWINENTFIRRTLRRIFQRKAIISSEVAKGKNEEEEAQKYAQYFDWEEALNKAPSHRVLAMLRAEKEGFVKLKVQVDS EETLPFMEENIIKSRGEVADFLKKTVKDSYKRLLEPSISNETLQEAKDKADAKAISVFAENLSQLLLASPLGEKRILAID PGYRTGCKVVCLDEKGDLLHHDVIYPHAPQNDMTMATKKLSTMVSQYNIQAISIGNGTASRETESFVRSIAFPKKVEVFV VSEAGASVYSASKIARDEFPDYDVTVRGAVSIGRRLADPLAELVKIDPKSIGVGQYQHDVNQSLLKEELDATVVRCVNKV GVNLNTASKSLLSYVSGIGEKMAENIVAYRSANGAFSKREDLKKVPRLGDKVYQQAVAFLRVHNSENPLDNSAVHPEAYP IIKQMAKHTGISVAQLIGNKQAIATIDIQKYKTDKVGELYLKDVLKELEKPGLDPRTTAKAFAFDPNVKTFDDVRVGMIL PGIVNNITAFGCFVDIGVKESGLVHISQLKEGYVSDVNEVVKLHQQVQVKVIEKDEVRKRISLSMVW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 6e-141 | 47 |
