Gene Information

Name : Coch_0175 (Coch_0175)
Accession : YP_003140299.1
Strain : Capnocytophaga ochracea DSM 7271
Genome accession: NC_013162
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 211961 - 212641 bp
Length : 681 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP0584 ABC transporter ATPase

DNA sequence : 
ATGAGTTTATTAGAGATTAAAAATATCAAACGAGATTTTAGATTAGGGTCTGAAATACTGCACGTACTGAAAGGCATCAA
CCTATCTATAGAAAAGGGAGAATACCTTGCCCTTATGGGACCATCGGGCTCTGGTAAATCTACTTTGATGAACATCTTAG
GGTGCTTAGATACGCCTACCTCAGGCGAGTATATTCTGAACGGTAAAGATGTAAGCAAGATGAGCGACTCGGAATTAGCC
GACATTCGCAATAAAGAGATAGGCTTCGTATTTCAAACCTTCAACCTAATGCCACGTACTACGGCTTTAGACAATGTAGC
TTTGCCTATGGTATACGCAGGCGTTAAGAAAGAAAAACGACACGAGCGCGCTAAAGAAGTACTGAAATTAGTAGGATTAG
AAGACCGTATGCTTCACAAACCCAATGAACTATCAGGAGGGCAACGCCAAAGAGTAGCTATAGCGAGAGCTTTGGTAAAC
CACCCTTCAATTATCTTAGCCGATGAGCCTACTGGGAACCTTGATTCTAAAACTTCTTATGAAATAATGAACCTTTTTGA
CGAAATCTACCAAAAAGGGAATACCGTTATCTTGGTAACCCACGAAGAAGACATTGCTCGGTATGCCAAACGGATTGTCC
GCTTAAAAGACGGACTTATAGAAACTGATAGCGCTAAGTAA

Protein sequence : 
MSLLEIKNIKRDFRLGSEILHVLKGINLSIEKGEYLALMGPSGSGKSTLMNILGCLDTPTSGEYILNGKDVSKMSDSELA
DIRNKEIGFVFQTFNLMPRTTALDNVALPMVYAGVKKEKRHERAKEVLKLVGLEDRMLHKPNELSGGQRQRVAIARALVN
HPSIILADEPTGNLDSKTSYEIMNLFDEIYQKGNTVILVTHEEDIARYAKRIVRLKDGLIETDSAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 4e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Coch_0175 YP_003140299.1 ABC transporter-like protein NC_012469.1.7686878. Protein 8e-61 58
Coch_0175 YP_003140299.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-49 50
Coch_0175 YP_003140299.1 ABC transporter-like protein CP001581.1.gene598.p Protein 1e-44 45
Coch_0175 YP_003140299.1 ABC transporter-like protein CP001581.1.gene798.p Protein 6e-43 45