Gene Information

Name : Cyan8802_1556 (Cyan8802_1556)
Accession : YP_003137302.1
Strain : Cyanothece sp. PCC 8802
Genome accession: NC_013161
Putative virulence/resistance : Virulence
Product : Retinal dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.36
Position : 1592768 - 1594240 bp
Length : 1473 bp
Strand : -
Note : PFAM: aldehyde dehydrogenase; KEGG: aldh2b; aldehyde dehydrogenase 2b; K00128 aldehyde dehydrogenase (NAD+)

DNA sequence :
ATGGTAACAGCAACTCGACCAGAACCTAAAGTTAAACTCGGTCCGACTCAATTATTAATTAATAACCACTGGGTCGAAAG
TGTCTCAGGAAAACGCTTTGAAACCATTAACCCCGCTACAGGAGAAGTCATCTGTGATGTCGCAGAAGCCAATGCGGCTG
ATGTCGATAAAGCGGTTCAAGCAGCGCGTCAAGCGTTTACCCGTGGCGACTGGCCGCAACTTTCCCCCACCAAACGGGGA
GAATTACTCTATAAACTAGCTAACCTGATCGAAGCCAATAAAGAGGAATTAGCTCGCTTAGAAACCCTCGATAATGGAAA
ACCGCTCACAGACTCCCTCAATGCCGATTTATCCCTGGTTATCGCTTGCTATCGCTATTATGCGGGTTGGGCGGATAAAG
TGCAAGGAAAAACCATTCCCATCAACGGCCCCTATTTTTGCTACACTCGCCATGAACCGGTGGGAGTCGTCGGTCAAATT
ATCCCTTGGAATTTCCCCCTGTTGATGCAAGCATGGAAATTAGCCCCCGCTTTAGCCATGGGGAACACGGTGGTCATGAA
AACCGCCGAACAAACTCCCCTATCCGCATTACGGGTCGGAGAATTGATCCTAGAAGCAGGGTTCCCCCCTGGAGTCGTCA
ACTTACTTTCAGGATATGGTCCCACGGCAGGACAAGCGATCGCCCGTCACAGGGATATTGATAAAGTTGCCTTTACGGGG
TCTACAGAAGTGGGACACCTGATCATGGAAGCAGCCGCCCAAAGTAACCTCAAGCGCGTTACCTTGGAATTAGGTGGGAA
AAGCCCTAATATTGTCTTTGCTGACGCGAATTTTGAGGAAGCCATCGAAGGATCTCATCAGGGGCTGTTTTTTAACCAAG
GACAGTGTTGTTGTGCGGGATCTCGGCTATTTGTCGAAGAGTCCTGTTATGACGAATTTGTGACCAAAAGTGTCGAACGA
GCCCGCAGTCGTCGCGTCGGTGATCCCTTCGATAGCAACACCGAACAGGGTCCCCAAGTCGATCAAGAACAGTTTAACAA
GGTGATGGGCTATATCGAGTCAGGACAGCGCGACGGGGCTCAGATGCTGTGTGGTGGGGGTCGTTTGGGCGATCGCGGTT
ATTTTATCGAGCCCACAGTGTTTGCGGGGGTTCGTGATGATATGAAAATTGCCCAGGAGGAGGTTTTTGGACCGGTGATG
AGTATTATCAAGTTTAAAGACGTTGAGGAGGTCATTCAACGGGCAAATAATACGATCTATGGCTTAGCTGCTGCGGTTTG
GACTAAAGATATTACCAAAGCTCATGCGATCGCTAATGGAGTCCGTGCGGGTACAGTTTGGGTCAATTGTTACGATGTCT
TCGATGCGGCTGCACCTTTTGGTGGGTTCAAACAGTCTGGTATGGGTCGAGAATTGGGTGAATACGGTCTTCAACAGTAC
ACCGAGGTTAAGACGGTGACGATTAAATTGTAG

Protein sequence :
MVTATRPEPKVKLGPTQLLINNHWVESVSGKRFETINPATGEVICDVAEANAADVDKAVQAARQAFTRGDWPQLSPTKRG
ELLYKLANLIEANKEELARLETLDNGKPLTDSLNADLSLVIACYRYYAGWADKVQGKTIPINGPYFCYTRHEPVGVVGQI
IPWNFPLLMQAWKLAPALAMGNTVVMKTAEQTPLSALRVGELILEAGFPPGVVNLLSGYGPTAGQAIARHRDIDKVAFTG
STEVGHLIMEAAAQSNLKRVTLELGGKSPNIVFADANFEEAIEGSHQGLFFNQGQCCCAGSRLFVEESCYDEFVTKSVER
ARSRRVGDPFDSNTEQGPQVDQEQFNKVMGYIESGQRDGAQMLCGGGRLGDRGYFIEPTVFAGVRDDMKIAQEEVFGPVM
SIIKFKDVEEVIQRANNTIYGLAAAVWTKDITKAHAIANGVRAGTVWVNCYDVFDAAAPFGGFKQSGMGRELGEYGLQQY
TEVKTVTIKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 6e-95 48
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 3e-95 47
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-97 46
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-97 46
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-97 46
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 8e-97 46
hpaE AAO17179.1 HpaE Not tested tcd island Protein 1e-87 43
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 5e-84 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cyan8802_1556 YP_003137302.1 Retinal dehydrogenase VFG0082 Protein 1e-95 47