Gene Information

Name : Svir_05500 (Svir_05500)
Accession : YP_003132451.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase (acceptor)
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.8
Position : 558688 - 560127 bp
Length : 1440 bp
Strand : -
Note : PFAM: Aldehyde dehydrogenase family

DNA sequence :
GTGAGCCAGTGGGAATACGCACCCGCGCCCGAATCGCGCGACATCGCCAATCTGAAACCGACGTACCGACCGTTCATCGG
TGGTGAGTTCGTCGACGGCTCGGGTGAGCCGTTGCAGACGATCAACCCGGCCACCGAGGAAGTGCTGGCCGAGGTCGGAA
CGGCCAGTGTGTCCGATGTGGACAACGCGGTGAAAGCGGCGAGGAAGGCCTACGACCGCGTGTGGGGACCGATGCCCGGC
ACCGAACGCGCCAAGTACATCTTCCGTATCGCCCGCCTCATCCAAGAGCGAGCGCGAGAACTCGCCGTGCTGGAGACGTT
GGACAACGGTAAGCCGATCAAGGAATCGCGCGACACCGACATCCCGACCGCCGCGGCGCACTTCTTCTACCACGCGGGCT
GGGCCGACAAACTCGAGTACGCGGGCCTGGGGCCCCAGCCCCGTCCACTCGGCGTGGCAGGCCAGGTCATCCCGTGGAAC
TTCCCGCTGCTCATGCTGGCCTGGAAGGTCGCTCCCGCCCTGGCCACCGGCAACACGGTGGTGCTCAAACCCGCCGAGAC
GACCCCGTTGACGGCGCTGGTGTTCGCCGAGATCTGCCAGCAGGCCGACCTGCCCCCGGGTGTGGTGAACATCGTGCCCG
GAGCCGGCGACATCGGAGCCGCGGTGGTCGAACACCCGGACGTCGACAAAGTCGCGTTCACCGGCTCCACCGCGGTCGGC
AAGCACATTCAGCGCACCCTCGCGGGGACCCGCAAACGCCTCACGCTCGAACTCGGCGGCAAGGCGGCGAACATCGTCTT
CGACGATGCCCCGCTCGACCAGGCGGTGGAAGGGATCGTCAACGGGATCTTCTTCAACCAGGGCCACGTGTGCTGCGCGG
GCTCCCGGCTGCTGGTGCAGGAGTCGATCGCCGAGGAACTGCTGGACAAACTCCGCGCGCGGATCTCCACACTGCGACTC
GGCGACCCGCTCGACAAGAACACCGACATCGGCGCCATCAACTCCGCCGAACAACTCGCCAAGATCGAGGACCTGGTCGC
CTCCGGGGAACGCGATGGTGCACAACGGTGGAGCAGCCCGTGCACGCTGCCCGACAAGGGGTTCTTCTTCGCGCCAACGG
TGTTCTCGAACGTCGAGCAATCCATGCGCATCGCACGCGAGGAGATCTTCGGTCCCGTGCTGTCGGTGCTGACGTTCCGC
ACCCCGGACGAAGCCGTCGCCAAGGCGAACAACACGCCCTACGGCCTATCGGCGGGAGTGTGGACCGAGAAGGGGTCACG
CATCCTCTGGATGGCGAATCGACTGCGCGCGGGCGTGGTGTGGGCCAACACGTTCAACCGGTTCGATCCCACCGCGCCGT
TCGGCGGATACAAGGAATCAGGATTCGGGCGCGAGGGCGGCCGGACGGGTCTGGAGGCGTACCTGCATGTCCAGGGTTGA

Protein sequence :
MSQWEYAPAPESRDIANLKPTYRPFIGGEFVDGSGEPLQTINPATEEVLAEVGTASVSDVDNAVKAARKAYDRVWGPMPG
TERAKYIFRIARLIQERARELAVLETLDNGKPIKESRDTDIPTAAAHFFYHAGWADKLEYAGLGPQPRPLGVAGQVIPWN
FPLLMLAWKVAPALATGNTVVLKPAETTPLTALVFAEICQQADLPPGVVNIVPGAGDIGAAVVEHPDVDKVAFTGSTAVG
KHIQRTLAGTRKRLTLELGGKAANIVFDDAPLDQAVEGIVNGIFFNQGHVCCAGSRLLVQESIAEELLDKLRARISTLRL
GDPLDKNTDIGAINSAEQLAKIEDLVASGERDGAQRWSSPCTLPDKGFFFAPTVFSNVEQSMRIAREEIFGPVLSVLTFR
TPDEAVAKANNTPYGLSAGVWTEKGSRILWMANRLRAGVVWANTFNRFDPTAPFGGYKESGFGREGGRTGLEAYLHVQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aldA ACK75580.1 aldehyde dehydrogenase Not tested VPI Protein 5e-51 43
aldA ACK75588.1 aldehyde dehydrogenase Not tested VPI Protein 6e-51 43
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 4e-68 43
aldA ACK75596.1 aldehyde dehydrogenase Not tested VPI Protein 9e-51 42
aldA ACK75577.1 aldehyde dehydrogenase Not tested VPI Protein 6e-51 42
aldA ACK75585.1 aldehyde dehydrogenase Not tested VPI Protein 2e-50 42
aldA ACK75593.1 aldehyde dehydrogenase Not tested VPI Protein 2e-50 42
aldA ACK75574.1 aldehyde dehydrogenase Not tested VPI Protein 9e-51 42
aldA ACK75590.1 aldehyde dehydrogenase Not tested VPI Protein 9e-51 42
aldA ACK75582.1 aldehyde dehydrogenase Not tested VPI Protein 6e-51 42
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_05500 YP_003132451.1 aldehyde dehydrogenase (acceptor) VFG0082 Protein 5e-72 41