Gene Information

Name : Svir_39180 (Svir_39180)
Accession : YP_003135687.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4241506 - 4242231 bp
Length : 726 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence :

ATGCTGCTGTGCATGCGTTCGCAGACAGAGACTCAAGCCCTCGGTGCGTCCACCGGGAGCGGTGTTCCGCCCGTGCTCGT
CGGGCGCGGACTGATCAAGACCTACGACACCCAGCGAGCGCTCGACGGAGTGAGTATCGAGATCGCCCGCGGTGAGGCCG
TGGCGATCGTCGGACCGTCGGGCTCGGGCAAGAGCACCTTGCTGCACGTCCTCGCGGGCATCCTCCCCGCCGACGAGGGT
GAGGTGTTCCTGGCCGGGCAACGGATCGACAGGCTCGGCGAGACCCGTCGCAGCAAACTGCGACGTGACGAGTTCGGGTT
CGTGTTCCAGTCGGGCATGCTCGTCTCCGAACTGACCGCCCAGGAGAACGCGGCGCTGCCGCTGTTGCTCGGCGGGACGT
CGCGCCGGAAGGCGATGGCCACCGCGGCCGAATGGCTGTCGAGGATGGGACTTGAGGGCAAGGAGAAGCGGCTGCCGGGG
CAGCTGTCCGGGGGTGAGGCCCAGCGGGTGGCCATCGCGCGGGCACTCGGGCACCGGCCGAGCGTCATCTTCGCCGACGA
GCCCACCGGCGCACTCGACAGTCGCACGGGTGCGGAGACCATGCGGGCGCTGCTCGACGCGGCGGCGGAGACCGACGCCG
CGGTCGTGGTCGTCACCCACGATCGGGAGCTGGCGGCGTCGATGCCGCGGATGGTGTCCATGCGCGACGGCAGGGTGCAG
TTGTGA

Protein sequence :

MLLCMRSQTETQALGASTGSGVPPVLVGRGLIKTYDTQRALDGVSIEIARGEAVAIVGPSGSGKSTLLHVLAGILPADEG
EVFLAGQRIDRLGETRRSKLRRDEFGFVFQSGMLVSELTAQENAALPLLLGGTSRRKAMATAAEWLSRMGLEGKEKRLPG
QLSGGEAQRVAIARALGHRPSVIFADEPTGALDSRTGAETMRALLDAAAETDAAVVVVTHDRELAASMPRMVSMRDGRVQ
L

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
cur_1502	YP_001800896.1	cell division ATP-binding protein FtsE	Not tested	Not named	Protein	7e-24	46
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	5e-29	45
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-29	43
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	1e-29	43
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	1e-29	43

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Svir_39180	YP_003135687.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7686878.	Protein	2e-34	42
Svir_39180	YP_003135687.1	ABC-type antimicrobial peptide transport system, ATPase component	NC_012469.1.7685735.	Protein	4e-27	42
Svir_39180	YP_003135687.1	ABC-type antimicrobial peptide transport system, ATPase component	CP001581.1.gene598.p	Protein	8e-29	41