Gene Information

Name : Svir_03380 (Svir_03380)
Accession : YP_003132246.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : ATPase component of Mn/Zn ABC-type transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 337149 - 337925 bp
Length : 777 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGACCCCGACCTTCGGCAGCGCACCCTCCGGGACACGACCCCACAAGACCACGCCCGCGTTGAGCCTCGTGGACTTCAG
CGCGTCCTACGGTGGCCGGAACGTGCTCTCGGGCGTCACCGTGGACATCCCCTCGGCGGCGTTGGCCGCGGTGGTCGGCC
CGAACGGCGCCGGCAAATCGACGCTGGTGAAAGCGGCGTTGGGGCTGGTGCCGTCGACCCAGGGGCGGGTGCGACTGCTG
GGGCAGCCGTTGTCCCGGGTGCGCCGCAAGGTGGCGTACGTACCGCAGCAGGACTCGGTGACCAAGGACTTCCCCATCAC
GGCCGTGCAGGTGGTGGAGATGGGCCGTTATCCGCATCGGGGCTGGTGGCGGCGCCTCACCCCCACCGACGACGAACTGG
TGGCCCAGGCGATGGAACAGGTGGGCGTGGTCGACCTCGCCGACCGTCCGATCGACGAATTGTCCGGAGGACAACGACAG
CGGGTGTTCCTGGCACGCGCGCTAGCCCAGCGCGCCGAGCTGGTGGTCCTGGACGAGCCGTTCACCGCCGTGGACGCTCG
CACGGAGTCGGCGCTGTTGGACGTGCTCACGAACCTGTGCCGGGAGGGTGTCTCGGTCATCGTCGTGCACCACGATCTGC
GCACGGTGTTGCGCAGGTTCGACCATGCCGTGTTGCTGGCCGGTGGTGTGGTGGCGGACGGACCGGTGGCCGACGTGCTC
ACCGCCGAGAACCTCGAACGCGCCTACGGCATCGCTCCCCTGGTGCTGGACTCATGA

Protein sequence : 
MTPTFGSAPSGTRPHKTTPALSLVDFSASYGGRNVLSGVTVDIPSAALAAVVGPNGAGKSTLVKAALGLVPSTQGRVRLL
GQPLSRVRRKVAYVPQQDSVTKDFPITAVQVVEMGRYPHRGWWRRLTPTDDELVAQAMEQVGVVDLADRPIDELSGGQRQ
RVFLARALAQRAELVVLDEPFTAVDARTESALLDVLTNLCREGVSVIVVHHDLRTVLRRFDHAVLLAGGVVADGPVADVL
TAENLERAYGIAPLVLDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-36 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-36 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-35 42
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-35 42
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_03380 YP_003132246.1 ATPase component of Mn/Zn ABC-type transporter BAC0400 Protein 5e-40 50
Svir_03380 YP_003132246.1 ATPase component of Mn/Zn ABC-type transporter BAC0350 Protein 2e-36 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_03380 YP_003132246.1 ATPase component of Mn/Zn ABC-type transporter VFG0526 Protein 1e-36 43