Gene Information

Name : Svir_28070 (Svir_28070)
Accession : YP_003134615.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3046280 - 3047056 bp
Length : 777 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGACGGCGCTACGGCTGGACGGCGTCGGGGTCGCCTACAATGGCAGACCGGCGGTGCGCGACGTGTCGGCGGAACTCGA
ACCCGGCGGTTGGCTGGCGATCGTCGGCCCCAACGGCGCCGGTAAGTCCACACTGCTCAAGGCCGTCGCCGGGCTCCTAC
CACATACCGGGACCATCACACTGCACGGTAGGAACGCCGGCTCGTTGACCCGCAGACAACGCGCTGAGCTGGTCGGTTAC
GCGGCCCAGAATCCCGTCCTGCCGGAAAGGTTGACCGTCACCGACTACGTGCTGCTGGGGCGCACCCCGCATCTGGGTCC
GTTGGGTCGGGAGAGCGCCGCCGACCTCGACGTGGTGCGCCGCGCACTGGAGCGGCTCGACCTCGGCGAACTCGCGGACC
GGAAACTCGGCACGCTGTCCGGTGGGGAACAGCAACGAGCCGTACTCGCCCGGGTGCTCGCCCAGCGGACGCGTCTGCTG
TTGCTCGACGAACCCACGTCGGGACTGGACATCGGCCATGCCCAGGCATTGCTGGAAAGACTCGACCAACTGCGGACCGA
GGACGGCACCACCGTGGTGACCACCCTGCACGACCTGTCGTTCGCCGCGCAGTACGCCGACACACTCCTGCTGCTCGACG
AGGGCCGGGTGGCGGTCACCGGCCCAGGACACGAGGTGCTGACGGCGTCTCGGCTGCGTCGCCACTACGCGGCCGACGTC
GAAGTGCTCACCACCAGTGGCGGGCATCCGGTGGTGGCTCCCGTCCGAAGTCCCTGA

Protein sequence : 
MTALRLDGVGVAYNGRPAVRDVSAELEPGGWLAIVGPNGAGKSTLLKAVAGLLPHTGTITLHGRNAGSLTRRQRAELVGY
AAQNPVLPERLTVTDYVLLGRTPHLGPLGRESAADLDVVRRALERLDLGELADRKLGTLSGGEQQRAVLARVLAQRTRLL
LLDEPTSGLDIGHAQALLERLDQLRTEDGTTVVTTLHDLSFAAQYADTLLLLDEGRVAVTGPGHEVLTASRLRRHYAADV
EVLTTSGGHPVVAPVRSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-42 44
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-42 44
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 3e-42 44
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 2e-42 44
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_28070 YP_003134615.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component BAC0164 Protein 4e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_28070 YP_003134615.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG1042 Protein 4e-33 42