Gene Information

Name : Svir_02590 (Svir_02590)
Accession : YP_003132168.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 257986 - 258894 bp
Length : 909 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
ATGGCGCGGGAAGGGCAGGTACGCGTGACTGGGAAGAACAGCAGCGACGGGGGTGCGGGAAGCAGGCTCCGCGCCGAGGG
CCTCACCCTCGCCTACGACGACAGCGTGGTGGTCCGCGACCTCGGGGTCGCCGTGCCGGACGGGTCGTTCACCGTGATCG
TGGGGCCGAACGCCTGCGGTAAATCGACGTTGCTCAAGGCACTCGCCCGGATGTTGAGACCGACCACGGGCGCGGTGTAC
CTCGACGGGCAGATCATCACCAGTTATCGCTCGCGCGAGGTGGCGCGGCGGCTCGGCCTGCTGCCGCAAAGTTCCATCGC
GCCCAACGGCATCACCGTCGGTGACCTGGTGGCCCGGGGCCGGTACCCCCATCAGAAACTGTTGCGACAGTGGTCGTCGG
AGGACGAGGCCGTGGTGGTGGAGGCCATGCGCCGCACGGGCGTGGCCGACCTCGCCGACCGCCTCGTCGACGAACTCTCC
GGCGGACAGCGGCAGCGGGTGTGGCTGGCGATGGTGCTCGCGCAACAGACCCCCATCCTGCTGCTCGACGAGCCGACCAC
GTTCCTCGACATCGCGCATCAGATCGAGGTGCTGGAGCTGTGCGCCGACCTCAACGCCGATTCCGGACACACCCTGGTGG
CGGTGCTGCACGACCTGAACCAGGCGTGCCGCTACGCCACGAACCTGATCGTGCTCGCACCGGGTGGGCGTATCGCCGCG
CAGGGCGATCCACGCGAGATCGTCACGGCCGAGTTGATCGCCGACGTGTTCGGGCTGCCCTGCCGCGTCATGGACGACCC
CGAGACGGGCACGCCGATGATCGTGCCCGCCGCGCGACGCCGTCCGGATTCGCGGGGACGCTCAGAAGACCACGGTGCGG
TTGCCGTGCACGAGCACGCGCCTCTCTAG

Protein sequence : 
MAREGQVRVTGKNSSDGGAGSRLRAEGLTLAYDDSVVVRDLGVAVPDGSFTVIVGPNACGKSTLLKALARMLRPTTGAVY
LDGQIITSYRSREVARRLGLLPQSSIAPNGITVGDLVARGRYPHQKLLRQWSSEDEAVVVEAMRRTGVADLADRLVDELS
GGQRQRVWLAMVLAQQTPILLLDEPTTFLDIAHQIEVLELCADLNADSGHTLVAVLHDLNQACRYATNLIVLAPGGRIAA
QGDPREIVTAELIADVFGLPCRVMDDPETGTPMIVPAARRRPDSRGRSEDHGAVAVHEHAPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-68 55
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-68 55
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-68 55
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-68 55
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-61 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-53 50
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-61 43
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-61 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_02590 YP_003132168.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component BAC0164 Protein 4e-53 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_02590 YP_003132168.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG0925 Protein 4e-80 60
Svir_02590 YP_003132168.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG1042 Protein 4e-53 50