Gene Information

Name : Svir_02440 (Svir_02440)
Accession : YP_003132153.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 245269 - 245952 bp
Length : 684 bp
Strand : +
Note : PFAM: ABC transporter

DNA sequence : 
GTGAGCGACGAGCCGCTGTTGCAGGCCACCGCCCTGTACAAGTCCTTCGGTGCCACGCAGGCACTGCGGGGCGCGAGCAT
CGAGGTCCACGCGGGGGAGATCGTGGCCGTGGTCGGTCCCTCGGGGTCGGGCAAGTCCACGTTGCTGCACTGTCTTGCGG
GGATCCTCGACCCCGATTCGGGGACGGTGCGTTACCGAGGCAGGGACCTGGACTCCCTGTCGGACAAACACCGCAGTGCC
CTGCGTCGCACGGAGTTCGGCTTCGTCTTCCAGTTCGGCCAGTTGGTACCCGAGCTCACCTGCGTGGAGAACGTCGCCAT
GCCCCTGCGGTTGAGTGGTGTCCGCAGGAGAACGGCCGAGGCCCGGGCGCTCGAGATGATGACGCGGCTTCAGGTGGACG
ACGTGGCCGACTCGCGTCCCGGGGACGTCTCCGGCGGGCAGGGACAGCGGGTCGCCGTGGCCCGTGCACTGGTCACCGGG
CCACGCGTGGTCTTCGCCGACGAACCGACCGGTGCGCTGGACTCCCTGAACGGTGAGCGGGTCCTGCGGCTGCTCGTCGA
GACGTCCCGGGCCAGCGACACCGCCGTCGTGCTCGTGACCCACGAAGCACGTGTGGCGGCGTATTCCCACCGGGAGGTCG
TCGTCCGTGACGGCTGTACGGATCCCCTCGGGGTTCCGGCATGA

Protein sequence : 
MSDEPLLQATALYKSFGATQALRGASIEVHAGEIVAVVGPSGSGKSTLLHCLAGILDPDSGTVRYRGRDLDSLSDKHRSA
LRRTEFGFVFQFGQLVPELTCVENVAMPLRLSGVRRRTAEARALEMMTRLQVDDVADSRPGDVSGGQGQRVAVARALVTG
PRVVFADEPTGALDSLNGERVLRLLVETSRASDTAVVLVTHEARVAAYSHREVVVRDGCTDPLGVPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_02440 YP_003132153.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 4e-29 46
Svir_02440 YP_003132153.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_02440 YP_003132153.1 ABC-type antimicrobial peptide transport system, ATPase component VFG2059 Protein 1e-21 44