Gene Information

Name : Svir_20790 (Svir_20790)
Accession : YP_003133919.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2222628 - 2223404 bp
Length : 777 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
GTGACCGCACGCTTGCGCGCACAGAAGATCACGTTGCGCTACGGCGAACGTGTGGTGTCGACACGGCTGAGTTTGGACAT
CCCGGACGGCGCCTTCACCGCCATCGTGGGTCCGAACGCCTGTGGGAAGTCGACGTTGTTGCGTGCGTTCGTCCGCTTGC
TGCAGCCTGCGGCCGGTTCCGTGACGTTCGACGGCAAGGACGTGCACACGTACTCGTCGAAGGCCTTGGCCCGGTCGTTG
GCGTTCCTGCCGCAGGAACCGGTGGCCCCCGAGGGCATCCGGGTCCGGCAGCTTGTGGGCCGAGGTCGTTTCCCGCATCA
GTCGCTGTTGTCGATGTGGTCGGAGGAGGACGAGCAGGCGGTCACCGAGGCGATGGAGATCGCGGGCATCACCGAGCTGG
CGGATCGCCCGGTGCAGGAGCTGTCCGGCGGACAGCGGCAACGGGCGTGGGTGGCCATGGTGTTGGCCCAGCGGACGCCG
TATCTGCTTCTGGACGAACCGACTTCCTTTCTGGACATCACGCACCAGTACCGGTTGCTCTCGTTGTTCGCCCGGTTGCG
GGACGAGGGGCGCACCGTCATCGCGGTGCTGCACGACATCAATCAGGCCTGCCGATTCGCCGATCACCTGGTCGCGGTGA
AGGAGGGGCGGATCGTCGCGGAAGGGGCGGCGGAGGACATCGTCGACGCCGCGTTGCTCAAGGAAGTGTTCGATCTGCCG
AGTGTCGTCGTGCCCGATCCGGTGACCGGGACCCCCATGGTCGTTCCGACGATGTGA

Protein sequence : 
MTARLRAQKITLRYGERVVSTRLSLDIPDGAFTAIVGPNACGKSTLLRAFVRLLQPAAGSVTFDGKDVHTYSSKALARSL
AFLPQEPVAPEGIRVRQLVGRGRFPHQSLLSMWSEEDEQAVTEAMEIAGITELADRPVQELSGGQRQRAWVAMVLAQRTP
YLLLDEPTSFLDITHQYRLLSLFARLRDEGRTVIAVLHDINQACRFADHLVAVKEGRIVAEGAAEDIVDAALLKEVFDLP
SVVVPDPVTGTPMVVPTM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-62 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-64 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-64 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-64 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-64 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-56 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-56 43
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-56 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-51 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_20790 YP_003133919.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component BAC0164 Protein 3e-56 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_20790 YP_003133919.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG0925 Protein 2e-73 56
Svir_20790 YP_003133919.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG1042 Protein 2e-56 48