Gene Information

Name : Svir_17610 (Svir_17610)
Accession : YP_003133615.1
Strain : Saccharomonospora viridis DSM 43017
Genome accession: NC_013159
Putative virulence/resistance : Virulence
Product : ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1826603 - 1827358 bp
Length : 756 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGAGAGTCGCCGCGCACGACGTCACCTGGGTCCGCAACGGACACGTCGTACTCGACGAGGTGACCGTCGAAGCGCCCGA
GGGATCGATCACCGGTCTCGTCGGTCCCAACGGCTCTGGAAAGACGAGCCTGTTGCTGTTGTTGGCAGGCCTGCATCGGC
CGACCCGGGGGCGCGTACTCCTGGGAACGCGGGACGTCGCGACGATCCCCGTTCGCGAACGTGCCCGCCTCGTCGCGTTG
CTCGAACAACACGCCACGACGGCACTGGACCTCACCGTGCGCCAGGTGGTCGAACTCGGCCGGATCCCCCACCGCCGCCT
CGGTTCACCCGACTCCGCGGGCACGGTGGTCGACGACGCGATGGCCGCCGCGAACGTGGAGCACCTGGCCCGGCGACGCT
GGCAGACGCTCTCGGGCGGGGAGCGTCAGCGTGTTCAGCTCGCCCGCGCGCTCGCGCAGCAACCGTCGGTACTCCTGCTC
GACGAACCCACGAACCATCTCGACCTCGGGCACCAGCTGGAGTTGATGCGCACCGTCCGGCGACTCGGGGTGACGGTCGT
CGCGGCGCTGCACGACCTCGACCTGGCCGCGGCGTACTGTGACCGGCTCGCCGTCCTCGAGACGGGTCACCTCGTCGCGG
CCGGTCCCGTTGACGAGGTGCTCGACGGTCATCTCGTCGCCCGGGTCTACGGCGTGCGCGCCGACGTGGAAAGACACCCG
GCGGCCGACCGACTGACGGTGGTGTGGCACCCATGA

Protein sequence : 
MRVAAHDVTWVRNGHVVLDEVTVEAPEGSITGLVGPNGSGKTSLLLLLAGLHRPTRGRVLLGTRDVATIPVRERARLVAL
LEQHATTALDLTVRQVVELGRIPHRRLGSPDSAGTVVDDAMAAANVEHLARRRWQTLSGGERQRVQLARALAQQPSVLLL
DEPTNHLDLGHQLELMRTVRRLGVTVVAALHDLDLAAAYCDRLAVLETGHLVAAGPVDEVLDGHLVARVYGVRADVERHP
AADRLTVVWHP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 1e-23 46
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 1e-23 46
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 1e-23 46
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-23 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-29 44
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 4e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_17610 YP_003133615.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component BAC0164 Protein 3e-29 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Svir_17610 YP_003133615.1 ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component VFG1042 Protein 3e-29 44