Gene Information

Name : Cpin_0961 (Cpin_0961)
Accession : YP_003120660.1
Strain : Chitinophaga pinensis DSM 2588
Genome accession: NC_013132
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1152489 - 1153151 bp
Length : 663 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_7144 ABC transporter, ATP-binding protein

DNA sequence : 
ATGATACAATTAAGACATATCTCCAAGTATTATCCCGTTGGATTTGGTAAGAATGAAATATTAAAAGATATTGATCTCAG
AATTTTCGAAGGAGAGTTTGTATCTATAATGGGCCCTTCCGGTTCAGGTAAATCCACCTTGTTACATATAATGGGCTTGC
TGGAAGAACCTAATCAGGGCGAATACCTGTTTGACGGAGAACCGGTGCATAAGATGAATGAGAAGAAACGTACCCAACTG
CACCGGGGCGCCATAGGATTTGTTTTCCAGGCTTATCACCTGATTGATGAGCTGACGGTATATGAAAACATTGAGACACC
ATTGCTATATAAGAATGTTCCCGCTGCTGAACGTAAGAGCCGTGTGGCTGATATCCTGGATCGTTTCAATATAGTAGCTA
AAAAAGACCTTTTTCCTAGTCAGTTGTCCGGCGGACAACAACAGCTGGTTGGTATAGCCCGTGCGCTGGTAGGCGAGCCT
AAAGTGATCCTGGCTGATGAACCAACCGGTAACCTGCATTCTGATCAGGCGAAGGAGATCATGGAGCTGTTCAAGCAACT
GAATGAAAAAGATAAGATTACGATAGTACAGGTAACGCATTCCGAAGTTAATGCAGGTTATGGTCACAGGATCATACAGA
TCCGTGACGGGAAAATCGCATAA

Protein sequence : 
MIQLRHISKYYPVGFGKNEILKDIDLRIFEGEFVSIMGPSGSGKSTLLHIMGLLEEPNQGEYLFDGEPVHKMNEKKRTQL
HRGAIGFVFQAYHLIDELTVYENIETPLLYKNVPAAERKSRVADILDRFNIVAKKDLFPSQLSGGQQQLVGIARALVGEP
KVILADEPTGNLHSDQAKEIMELFKQLNEKDKITIVQVTHSEVNAGYGHRIIQIRDGKIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpin_0961 YP_003120660.1 ABC transporter NC_012469.1.7686878. Protein 4e-41 45
Cpin_0961 YP_003120660.1 ABC transporter CP001581.1.gene798.p Protein 1e-29 43
Cpin_0961 YP_003120660.1 ABC transporter CP001581.1.gene598.p Protein 8e-28 42
Cpin_0961 YP_003120660.1 ABC transporter NC_008702.1.4606598. Protein 7e-32 42