Gene Information

Name : Cpin_0956 (Cpin_0956)
Accession : YP_003120655.1
Strain : Chitinophaga pinensis DSM 2588
Genome accession: NC_013132
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1142091 - 1142780 bp
Length : 690 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4701 ABC transporter, ATP-binding protein

DNA sequence : 
ATGATACGTACAGTCAATCTTCAAAAGATTTTTACAACAGAAGAAATTGAGACTTCTGCATTGAATGGCATTAACATGGA
AGTAAAGGATGGTGAATTCGTTGCTATCATGGGTCCTTCAGGTTGTGGTAAATCCACCTTGCTGAATATTCTGGGTTTGC
TGGATAACCCTAGTGGCGGGGAATATCATTTCTGGGACCATGAAGTAGCGCGTATGAGCGAACGTCAGCGTGCACAACTC
AGAAAGGGTTCTATTGGTTTCGTATTCCAGAGTTTCAACCTCATTGATGAACTGACTGTATTTGAAAACGTAGAGTTACC
GCTCTTGTATCTGAAGGTACCTGCCAGTGAGAGGAAGGAGAAAGTTGAGAAAGTGCTGGAGCGTATGAATATCATGCATC
GCCGTAATCACTTCCCGCAGCAGTTATCCGGTGGTCAGCAGCAGCGTGTGGCGATTGCCCGTGCGGTAGTAGCTAATCCG
AAAATGATATTGGCGGATGAGCCTACCGGTAACCTGGATTCTACGAATGGTGAAGAAGTAATGAAGTTGTTGCAGGAGCT
GAATGAGGCCGGTACTACGATGATCATGGTAACGCACAGTCCTTATGATGCTGGTTTTGCACACCGTGTTGTCAACTTAT
TTGACGGTCGCGTAGTGACTGAAAATATCAAAGAACAATTCCACGTATAG

Protein sequence : 
MIRTVNLQKIFTTEEIETSALNGINMEVKDGEFVAIMGPSGCGKSTLLNILGLLDNPSGGEYHFWDHEVARMSERQRAQL
RKGSIGFVFQSFNLIDELTVFENVELPLLYLKVPASERKEKVEKVLERMNIMHRRNHFPQQLSGGQQQRVAIARAVVANP
KMILADEPTGNLDSTNGEEVMKLLQELNEAGTTMIMVTHSPYDAGFAHRVVNLFDGRVVTENIKEQFHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-24 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpin_0956 YP_003120655.1 ABC transporter NC_012469.1.7686878. Protein 5e-42 49
Cpin_0956 YP_003120655.1 ABC transporter NC_008702.1.4606598. Protein 3e-34 47
Cpin_0956 YP_003120655.1 ABC transporter CP001581.1.gene798.p Protein 4e-26 45
Cpin_0956 YP_003120655.1 ABC transporter NC_012469.1.7685735. Protein 1e-26 44
Cpin_0956 YP_003120655.1 ABC transporter NC_012469.1.7686946. Protein 1e-22 42