Gene Information

Name : Cpin_6888 (Cpin_6888)
Accession : YP_003126490.1
Strain : Chitinophaga pinensis DSM 2588
Genome accession: NC_013132
Putative virulence/resistance : Resistance
Product : macrolide ABC transporter ATP-binding proten
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 8626699 - 8627415 bp
Length : 717 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_4199 macrolide efflux ABC transporter, ATP-binding protein

DNA sequence : 
ATGCACCCAAGTTCCGTCATCCATTTAGAACACATCCGTAAGAGCTATTTCATTGGAAAAAATGAACTGCCTGTACTGAA
AGGAATCAATCTGGACATTTTAAAAAATGAGTACGTAGCGCTGATGGGACCTTCCGGTTCCGGCAAATCCACGCTGATGA
ATATGCTCGGCTGTCTTGACAGTCCGACCAGCGGAAAATATGTACTGAGTGGCCATGATGTGAGCCAGATGGAAGACGAT
GCGCTGGCAAGGGTGCGTAATAAAGAAATCGGCTTTGTATTTCAGCAGTTTAACCTGATGCCGCGTCTCAGCGCATTAGA
AAATGTGGCAGTACCGCTGATCTATGCCGGTATTAACAAAAAAGACCGGGAAGACAAAGCCCGCTTTATGCTGGAAAAAG
TGGGTCTCGGACAGCGTTACAAGCACAGACCCAATGAGTTATCCGGAGGTCAGTGTCAGCGTGTCGCGATCGCCCGCGCC
CTGGTAAATGATCCCTCCCTGATACTCGCCGATGAACCCACAGGTAACCTCGATACCAAAACTTCCATAGAAATCATGGA
TATCTTCGGTAGTATCCACGCCTCCGGTAATACGGTCGTGCTGGTCACCCACGAAGAAGATATCGCCGCTCATGCCCGCC
GTGTGGTACGTCTGCGTGACGGATTAATAGAATCTGACAGACTGAACGCGGAAATCCTCGCAGAAGCAGTGAAATAA

Protein sequence : 
MHPSSVIHLEHIRKSYFIGKNELPVLKGINLDILKNEYVALMGPSGSGKSTLMNMLGCLDSPTSGKYVLSGHDVSQMEDD
ALARVRNKEIGFVFQQFNLMPRLSALENVAVPLIYAGINKKDREDKARFMLEKVGLGQRYKHRPNELSGGQCQRVAIARA
LVNDPSLILADEPTGNLDTKTSIEIMDIFGSIHASGNTVVLVTHEEDIAAHARRVVRLRDGLIESDRLNAEILAEAVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-29 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpin_6888 YP_003126490.1 macrolide ABC transporter ATP-binding proten NC_012469.1.7686878. Protein 2e-57 58
Cpin_6888 YP_003126490.1 macrolide ABC transporter ATP-binding proten NC_008702.1.4606598. Protein 1e-45 48
Cpin_6888 YP_003126490.1 macrolide ABC transporter ATP-binding proten CP001581.1.gene798.p Protein 3e-37 44
Cpin_6888 YP_003126490.1 macrolide ABC transporter ATP-binding proten CP001581.1.gene598.p Protein 2e-37 42