Gene Information

Name : Cpin_4940 (Cpin_4940)
Accession : YP_003124574.1
Strain : Chitinophaga pinensis DSM 2588
Genome accession: NC_013132
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 6177585 - 6178334 bp
Length : 750 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein

DNA sequence : 
ATGAGCCAAAAAATACTGGAAATACAGCATATCAAGCGGGAATTCCGGATGGGAACGGAGGTGGTCCGTGCGCTTAAAGG
CGTGTCGTTTGACGTCTTCGCAGGGGAGTTTGTGACCATCATGGGGAGCAGCGGATCCGGCAAGACGACACTGCTGAATA
TACTCGGCTGCCTGGATAAGCCGACTGACGGCAATTATTTGCTGGATGGTGTAAATATCGGCCAGCTCTCCAGGAATGAA
CTGGCAAGATTGCGGAACAGGAAGATCGGGTTTGTATTTCAGGCGTATAACCTGCTGCCCCGTACTTCAGCATTGGAAAA
TGTGGAACTGCCCTTGCTGTACAACATGGAGATCACCCATGAACAACGCCGGCAGAAGGCGATTCATTCCCTGGAAGCCG
TAAAACTGGGTGAGCGTTTAGGACATACGCCCAATCAGTTGTCAGGTGGGCAGCAACAACGGGTGGCTATTGCCCGGGCA
CTGGTGAATGAACCGGTCATGATACTGGCGGACGAGGCGACCGGTAACCTCGATACCCGTACTTCCTACGAAATCATGGC
ATTGATGCAGGAGCTCAACAAGGAACAGGGGAAAACGATCGTATTCGTGACGCATGAACCTGATATTGCAGCTTTCAGCA
GTCGTACGGTAATGTTGCGGGACGGTAAAGTGGTAAAAGATACTGTCAACGAAAATGTACGCTCGGCAAAAGATGCACTG
GCGTCATTGCCACCAGCGGATGATTATTGA

Protein sequence : 
MSQKILEIQHIKREFRMGTEVVRALKGVSFDVFAGEFVTIMGSSGSGKTTLLNILGCLDKPTDGNYLLDGVNIGQLSRNE
LARLRNRKIGFVFQAYNLLPRTSALENVELPLLYNMEITHEQRRQKAIHSLEAVKLGERLGHTPNQLSGGQQQRVAIARA
LVNEPVMILADEATGNLDTRTSYEIMALMQELNKEQGKTIVFVTHEPDIAAFSSRTVMLRDGKVVKDTVNENVRSAKDAL
ASLPPADDY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-30 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpin_4940 YP_003124574.1 ABC transporter NC_012469.1.7686878. Protein 1e-54 51
Cpin_4940 YP_003124574.1 ABC transporter CP001581.1.gene798.p Protein 3e-38 45
Cpin_4940 YP_003124574.1 ABC transporter CP001581.1.gene598.p Protein 3e-41 43
Cpin_4940 YP_003124574.1 ABC transporter NC_008702.1.4606598. Protein 1e-41 43