Gene Information

Name : Cpin_4853 (Cpin_4853)
Accession : YP_003124488.1
Strain : Chitinophaga pinensis DSM 2588
Genome accession: NC_013132
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 6070333 - 6071706 bp
Length : 1374 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: dal:Dalk_0340 two componen

DNA sequence : 
ATGAACAGTAAAGGAAACATATTGATAGTTGAAGACGAATTTATTGTCGCAAATGATCTGCGTCTTATGCTTCAGAAAGC
AGGATACGCCATCTGTGGCATTGCGGCTTCTGTTGTGCAGGCGCGTGCGCTGATTGAAAAACACAGTCCGGAATGGGTAT
TACTGGATATCATCCTTAAAGGCGACCTGTCCGGTATTGACCTGGGAAAAGAGTTAATGGAGAAAAAAGTACCGTTCCTT
TACATTTCCGCCAATACCAACCACCGTACCCTGGAAGCGGCCAAACTAACTCAGCCCTATGGTTTCCTTGTAAAGCCTTT
CCGGGAAAAAGACCTCTTTGTGATGCTGGACATCGCACGATACAAACATCAGACAGAAAACGTGCGCCTGCAGCGGGAAG
CTGCCGTAAAAGCAGACACCAACTGCCTGGATGCTATTATCGGGACCAGTCCGAAAACCAAAGAACTGATAGAACAGATA
AAAATAGTCGCCCCCTCCGATACCTCTGTGCTGATCACCGGCGAAAGTGGTACCGGTAAGGAAATGGTGGCACAATGTAT
ACACCGTCTCTCTCCACGTGCTAATCGGCCGCTGGTAGTCGTGAACTGCGCCGCCCTGCCCCTCTCCCTCATAGAAACAG
AGCTCTTCGGTCATGAAAAAGGCGCTTTCACCGGCGCAACACAGAAACGTACCGGCCGCTTCGAACAAGCCGATAAAGGC
ACTATCTTCCTCGACGAGATCGGGGAAATGCCGCCGGATGCACAGGTAAAACTACTAAGGGTATTACAGGAAAAAGAGAT
CGAACGTGTAGGCGGAGAAAGCCCGGTAAAAGTGGACGTTCGTATCATTGCAGCTACCAACAGACAACTGGAAAAAGAAG
TAGCAGAAGGCCGGTTCAGACTGGACCTCTATTACCGCCTGAGTATCTTCCCCCTGGAATTACCGCCGCTGCGAAACAGA
AAAGAAGACATTCATGCGCTGGCGCACCATTTCCTGAGAAAATATGCTACAAAGAATAATATACCGGTAGAAGGTATCAG
CGATAATGCGATGCGGGAACTGATGTCCTACGACTGGCCGGGTAACATCCGCGAACTGGAACACGTCATCGAAAGACATG
TGTTGCTGTCAACCACCCATCAGATTGAGCGTATCGATATGCCGGCAGCCCTCTTACGGGAAACTGAAACGGTGCAGTCA
GGGAAACTGAAAACAATGGAAGAAGTGGAACGTGATCATATCATCAATGCCCTGAAAGCAGGCAAAGGAAAGGTATCCGG
ACCAGGCGGCGCAGCCGAACTACTTAGTATGCCCGCCCAGACACTCTACTCCCGCATGAAAAAACTGGGCATTAAACAGA
CTTTTAAAGGGTAG

Protein sequence : 
MNSKGNILIVEDEFIVANDLRLMLQKAGYAICGIAASVVQARALIEKHSPEWVLLDIILKGDLSGIDLGKELMEKKVPFL
YISANTNHRTLEAAKLTQPYGFLVKPFREKDLFVMLDIARYKHQTENVRLQREAAVKADTNCLDAIIGTSPKTKELIEQI
KIVAPSDTSVLITGESGTGKEMVAQCIHRLSPRANRPLVVVNCAALPLSLIETELFGHEKGAFTGATQKRTGRFEQADKG
TIFLDEIGEMPPDAQVKLLRVLQEKEIERVGGESPVKVDVRIIAATNRQLEKEVAEGRFRLDLYYRLSIFPLELPPLRNR
KEDIHALAHHFLRKYATKNNIPVEGISDNAMRELMSYDWPGNIRELEHVIERHVLLSTTHQIERIDMPAALLRETETVQS
GKLKTMEEVERDHIINALKAGKGKVSGPGGAAELLSMPAQTLYSRMKKLGIKQTFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-50 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpin_4853 YP_003124488.1 Fis family transcriptional regulator BAC0467 Protein 3e-74 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cpin_4853 YP_003124488.1 Fis family transcriptional regulator VFG1249 Protein 5e-62 43