|
Name : Cpin_4734 (Cpin_4734) Accession : YP_003124371.1 Strain : Chitinophaga pinensis DSM 2588 Genome accession: NC_013132 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 5908008 - 5909294 bp Length : 1287 bp Strand : + Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: wsu:WS0054 UDP-glucose 6- dehydrogenase DNA sequence : ATGATAGCAGTTATCGGCTTAGGCTATGTGGGCCTCCCCCTTGCAATTGAGTTTGCCAGAAAGTATAAAGTGCTGGGCTT TGATATCAACGCTGCGCGCGTCCATGAACTGTGCAACGAACAGGATAAAACCCGTGAAGCCGACATAGATGCCCTCCGCG AAGTACTGAAACAAGGAGCCAATACAGACGCCTCCGTCTCCGGCGGACTACAGCTTTCTTCCGATAAAAATGACCTGAAA GCCTGTCAGATATACATCGTTACCGTTCCCACTCCCATAGACCAGTTCAAATCACCCGATCTCACCTTCCTGCTGGGCGC CTCCGCCATGCTGGGCACCGTACTCAAACCAGGTGATATCGTTATTTATGAATCCACCGTATATCCGGGATGTACAGAAG ATGACTGCGTACCTGTACTGGAAGCACATTCCGGCCTACGTTACAACCAGGACTTTTTTGTAGGTTATTCGCCCGAAAGG ATTAACCCCGGTGATAAAGTCAATACCCTCACAAAGATCAAAAAAGTAACCAGCGGCTCCACTCCGGAAATAGCAACCCG TATCGACGAACTATACGCTTCCATCATCACTGCCGGTACGCATAAAGCCCCCAGCATTAAAGTAGCAGAAGCCTCCAAAG CCATCGAAAATGCGCAACGCGACGTCAATATTTCCTTTGTGAATGAACTGGCCCTGATCTTCGACCGTATCGGTATCGAT ACCAACGATGTCATCGAAGCAGCCGCTACTAAATGGAACTTTTTGAAATATAAACCCGGTCTGGTCGGTGGACACTGTAT CGGTGTAGATCCTTATTACCTGGCACATAAAGCCGAGTCATTAGGATACCATCCACAGGTTATTCTCTCCGGCAGACGCG TCAATGACCAGATGGGTTACTTCGTAGCCAGTAAGGTGGTTAAACTCATGATCGAAAAAGATCATAAGATTAAGGGCGCT CATGCCCTGATCATGGGAATCACATTTAAGGAGAATTGTCCTGATGTCCGGAATACGCGTGTTGTTGACATTTACCATGA ATTGAAGCAATACGGACTTGATGTTACGGTGTATGATCCATGGGCAGATCCGGAGGAAGTGAAAAAAGAATATGGCGTGC CTACTGTCACTAAACTGGAAGGAACGGAAGTCTTTGACGCCATGGTGATTGCGGTGGCACACCGGGAATTTCTGAGCTTC GACTTTAAAAAATTTGGCAGCAGTAATGCGGTTATTTTTGATACCAAAGCTTGTATAGACAGGGATTTGGTGGATGGAAG ACTGTAA Protein sequence : MIAVIGLGYVGLPLAIEFARKYKVLGFDINAARVHELCNEQDKTREADIDALREVLKQGANTDASVSGGLQLSSDKNDLK ACQIYIVTVPTPIDQFKSPDLTFLLGASAMLGTVLKPGDIVIYESTVYPGCTEDDCVPVLEAHSGLRYNQDFFVGYSPER INPGDKVNTLTKIKKVTSGSTPEIATRIDELYASIITAGTHKAPSIKVAEASKAIENAQRDVNISFVNELALIFDRIGID TNDVIEAAATKWNFLKYKPGLVGGHCIGVDPYYLAHKAESLGYHPQVILSGRRVNDQMGYFVASKVVKLMIEKDHKIKGA HALIMGITFKENCPDVRNTRVVDIYHELKQYGLDVTVYDPWADPEEVKKEYGVPTVTKLEGTEVFDAMVIAVAHREFLSF DFKKFGSSNAVIFDTKACIDRDLVDGRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 6e-113 | 53 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 6e-113 | 53 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-103 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cpin_4734 | YP_003124371.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 3e-113 | 53 |
