Gene Information

Name : Cpin_4217 (Cpin_4217)
Accession : YP_003123874.1
Strain : Chitinophaga pinensis DSM 2588
Genome accession: NC_013132
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 5269691 - 5270515 bp
Length : 825 bp
Strand : +
Note : PFAM: integrase catalytic region; KEGG: mgm:Mmc1_2644 integrase, catalytic region

DNA sequence :
ATGTGTAAAGTGTTTAAAGTAAGCCGCAGTGGCTATTATGCCTGGTTAATTAGAAAACCTTCAAAACAGGCGATTGAGAA
TCACGCTCTAAGCGATAGAATTGAAGCAATATACCGTTCTGGCAAAGGCCGGTATGGAAGTCCTAAAGTAACCAGGGTAC
TCAAATCAGATGGAATACATGTATCACAACGGAGAGTAGCCCGGATCATGAGGTCAAAAGGGCTCCGTAGTGTAATTGTA
GGTAAGTTTAAAGTCTGTACTACGGATTCTAATCATGACAAAGAGGTATCTTCTAACATATTAAACAGAGAATTCACTGC
AACGTCACCATCAGAAAAATGGGTCTCAGACATTACATATATCCGTACAAAATCCGGGTGGCTCTATCTCACTGTCATTA
TGGATCTGTTTGACAGGAAGATACTGGGATGGGCGATGAGTAAAGGGATGACAGCAGCAGAAACAGTAGTAGCAGCGTGG
AAAATGGCTATCAGGAACAGGTCTGTAAAAGAGCATATGATCATCCATTCAGACAGAGGCGTACAATATGCCAGTCATGA
ATTTCGGATATTGCTCAAATCAGGTCAAATAAGGCAAAGCATGAGCCGTAAAGGAAATTGCTGGGATAATAGTGTATGTG
AAAACTTTTTCAAAATTCTCAAGTCAGAAACAGGGATTAACATCATTTACGATTCCTTTGAGGTTGCCAGAAGAGAAATA
TTTGAGTTCATAGAAATCTGGTATAATCGAAGGAGAATACACTCCCGACTGGGATATATGACACCTGAACAATTTGGAAA
TTCTTTAATCAAACAAGCGGCTTAA

Protein sequence :
MCKVFKVSRSGYYAWLIRKPSKQAIENHALSDRIEAIYRSGKGRYGSPKVTRVLKSDGIHVSQRRVARIMRSKGLRSVIV
GKFKVCTTDSNHDKEVSSNILNREFTATSPSEKWVSDITYIRTKSGWLYLTVIMDLFDRKILGWAMSKGMTAAETVVAAW
KMAIRNRSVKEHMIIHSDRGVQYASHEFRILLKSGQIRQSMSRKGNCWDNSVCENFFKILKSETGINIIYDSFEVARREI
FEFIEIWYNRRRIHSRLGYMTPEQFGNSLIKQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-42 41
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-42 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-40 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-40 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-40 41