|
Name : araD (Cpin_3995) Accession : YP_003123658.1 Strain : Chitinophaga pinensis DSM 2588 Genome accession: NC_013132 Putative virulence/resistance : Unknown Product : L-ribulose-5-phosphate 4-epimerase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0235 EC number : - Position : 4970019 - 4970720 bp Length : 702 bp Strand : + Note : catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source DNA sequence : ATGAGCAAACAATATCAGGGCATAAAAGAGCAGGCTTACGAAGCCAATATGCAATTGCCTGCACTGGGACTGGTACTCTT TACATTCGGAAATGTAAGCGTAGTTGACCGTGCTGCCGGCGTATTTGCCATAAAACCCAGCGGCGTGCCTTATGTGCAGC TGTCGCCGGATCAGATGGTGATCGTTGACTTTGACGGTAACACCGTTGAAGGTAACAGCCGCCCCTCCTCGGATACCCAA ACTCATGCGGTATTATACAAGCACTGGGATGATATCGGCGGTATCGTACATACGCATTCCACGTATGCAACTGCCTGGGC ACAGGCACAGCGCGATATCCCTGTTTATGGTACTACGCACGCTGATCACCTTACCGCAGACGTACCCTGTGCAGCGCCTA TGAGTGATGACATGATCAAGGGGAATTATGAATACCAAACCGGTTTTCAGATCATGCAATGCCTGCAGGAAAGAGGTCTT TCCCACAAGGATGTAGAGATGTTACTTGTCGGTAATCACGCTCCTTTTACCTGGGGTAAAACAGCTGATAAAGCGGTCTA TAATGCCGCTGTGCTGGAAGAAGTAGCACGTATGGCATTTCTTACGGAGAGTATCCGTCCGGAATGTCCGAAGCTGAAAG AGGCGCTGATTAAAAAACATTTTGAACGCAAACACGGGCCCGATGCTTATTATGGACAATAG Protein sequence : MSKQYQGIKEQAYEANMQLPALGLVLFTFGNVSVVDRAAGVFAIKPSGVPYVQLSPDQMVIVDFDGNTVEGNSRPSSDTQ THAVLYKHWDDIGGIVHTHSTYATAWAQAQRDIPVYGTTHADHLTADVPCAAPMSDDMIKGNYEYQTGFQIMQCLQERGL SHKDVEMLLVGNHAPFTWGKTADKAVYNAAVLEEVARMAFLTESIRPECPKLKEALIKKHFERKHGPDAYYGQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| araD | YP_281517.1 | L-ribulose-5-phosphate 4-epimerase | Not tested | Not named | Protein | 1e-53 | 54 |
