Gene Information

Name : Caci_8900 (Caci_8900)
Accession : YP_003119554.1
Strain : Catenulispora acidiphila DSM 44928
Genome accession: NC_013131
Putative virulence/resistance : Virulence
Product : LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 10311280 - 10311945 bp
Length : 666 bp
Strand : +
Note : PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_5123 two-component system response regulator

DNA sequence : 
GTGAGCATCCGGGTCCTGATCGCCGACGACCAGGCGATGGTCCGTGCCGGGTTCGGCGCGCTGCTGGCGGCGCAGCCCGA
CATCGAGGTGGTCGGGGACGCCGCCGACGGCGCGCAGGCGCTCGCCGAGGCGGCCGCGCACCAGCCGGACGTGGTGCTGA
TGGACGTGCGGATGCCGGTGATGGACGGCCTGGAGGCCGCGCGGCGCATCCTCGCCGGCGCCCCCGAGCGGCCCAGGATC
CTGATGCTGACCACGTTCGACCTCGACGACTACGTCTACGCCGCGCTGCGCGCCGGCGCCAGCGGCTTCCTGCTCAAGGA
CGCCCCGGCGGCGGAGCTGGTCCATGCCGTCCGGGTGGTCGCCGCCGGGGACGCGCTGCTGGCGCCGTCGGTGACCCGCC
GGCTGATCGCGGACTTCGCCGCCCGGCGCCCCGCCGACCAGTCCGGACCGGTCGCCGTCGCGGCCCTGACCCCGCGCGAG
CTCGACGTCCTGCGGCTGATCGCCCGCGGGCTGTCGAACCAGGAGATCGCCGGCGAGCTGGTGCTGGCCGAGCAGACGGT
GAAGACGCACGTCTCGCGGATCCTGGCCAAGACCGGGCTGCGGGACCGGGCTCAGGCGGTGGTGCTGGCCTACGAATCGG
GGCTGGTGACGGCGAACAGCCGATGA

Protein sequence : 
MSIRVLIADDQAMVRAGFGALLAAQPDIEVVGDAADGAQALAEAAAHQPDVVLMDVRMPVMDGLEAARRILAGAPERPRI
LMLTTFDLDDYVYAALRAGASGFLLKDAPAAELVHAVRVVAAGDALLAPSVTRRLIADFAARRPADQSGPVAVAALTPRE
LDVLRLIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGLVTANSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
regB YP_001220830.1 putative two-component system response regulator Not tested chp/tomA region Protein 3e-27 47
DIP0091 NP_938488.1 two-component system response regulator Not tested Not named Protein 2e-29 43
CD241_0088 YP_005124357.1 two-component system response regulator Not tested Not named Protein 2e-29 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Caci_8900 YP_003119554.1 LuxR family transcriptional regulator VFG1824 Protein 4e-24 41