Gene Information

Name : Caci_4300 (Caci_4300)
Accession : YP_003115005.1
Strain : Catenulispora acidiphila DSM 44928
Genome accession: NC_013131
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4878901 - 4879812 bp
Length : 912 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_2555 ABC transporter

DNA sequence : 
ATGATGACCGATGATGTTCAGACTGTTGAGGCCGTTGACACGACCGCGGTCGCCTCCCGGCTCGGCGCTACCGGCCTGAC
GCTGGCGTATGACGGCCGGACCGTGGCCGAGGAGCTGTCCGTCGCGATCCCGGACCGGTCGTTCACCGTCATCGTCGGTC
CGAACGCCTGCGGGAAGTCGACGCTTCTCAGAGCACTGTCGCGGTTGCTGAAGCCGCGCGCCGGGACGGTCGTGCTGGAC
GGCGCGGACATCGCCTCGATGCCGACCAAGCAGGTCGCCAGGATCGTCGGGCTGCTGCCGCAGTCCTCGATCGCGCCGGA
CGGCATCACCGTCGCCGACCTGGTCTCCCGTGGCCGTCACCCGCATCAGGGGTTGCTGCGGCAGTGGTCGCGGGAGGATG
AGCGGATCGTGGCCGAGTCGATGGCGGCGACCGGTGTCTCTGACCTGGCCGAGCGGGCTGTCGATGAGCTGTCCGGTGGG
CAGCGTCAGCGGGTCTGGACCGCGATGGTGCTGGCGCAGCAGACGCCGCTGCTGTTGCTCGACGAGCCCACGACGTATCT
GGATATCGCGCATCAGATCGAGATTCTTGATCTGTGTGCGCGGCTGCACGAGGAGGAGGGGCGCACGCTGGTCGCGGTGC
TGCACGATCTCAACCAGGCGGCGCGGTACGCCACGCACTTGATCGTGCTCTGCGACGGTCGCGTCGCGGCGTCCGGACCG
CCCGCGGAGATCGTCACCGCCGAGCTGGTGGCGGCGGTGTTCGGGCTGACGTGCCGGGTCATCGAGGATCCGGAGACCGG
GACGCCGTTGGTCGTGCCGGGAGCGCGCCGGCGGGCGTCGATATATCGGACCGAAAATGTTTCGGACCCCGATATGAATG
GCTCCAGAAATAGTGGTTCTCCGAAGCCTTAG

Protein sequence : 
MMTDDVQTVEAVDTTAVASRLGATGLTLAYDGRTVAEELSVAIPDRSFTVIVGPNACGKSTLLRALSRLLKPRAGTVVLD
GADIASMPTKQVARIVGLLPQSSIAPDGITVADLVSRGRHPHQGLLRQWSREDERIVAESMAATGVSDLAERAVDELSGG
QRQRVWTAMVLAQQTPLLLLDEPTTYLDIAHQIEILDLCARLHEEEGRTLVAVLHDLNQAARYATHLIVLCDGRVAASGP
PAEIVTAELVAAVFGLTCRVIEDPETGTPLVVPGARRRASIYRTENVSDPDMNGSRNSGSPKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-66 51
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-64 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-64 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-64 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-64 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-52 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 9e-59 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 9e-59 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-49 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Caci_4300 YP_003115005.1 ABC transporter BAC0164 Protein 5e-52 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Caci_4300 YP_003115005.1 ABC transporter VFG0925 Protein 5e-75 59
Caci_4300 YP_003115005.1 ABC transporter VFG1042 Protein 5e-52 47