|
Name : Afer_1964 (Afer_1964) Accession : YP_003110541.1 Strain : Acidimicrobium ferrooxidans DSM 10331 Genome accession: NC_013124 Putative virulence/resistance : Unknown Product : ATP-dependent chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2060927 - 2063413 bp Length : 2487 bp Strand : + Note : KEGG: nfa:nfa54020 Clp protease ATP- binding subunit; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATP DNA sequence : ATGAGAACCGATCACTTCACCCACAAGCTCCAAGAGGCGCTGCAGGATGCGAAGCGCCTCGCCACCGAGCGCCAGAACCC CGAGGTCACCCCGCAGCACCTCGCGCTCGCCCTGCTCGGCCAACCCGACGGGATGGCGCTCGCCGTCCTCTCGCGAGCCG GGATCGCTCCCGCCAGCGTGCGCAACCAGCTCCTCGAGGCCCTCGAGCGCCTACCACGCGCCTACGGCCAAGCGGCCGAA CCGGCAGGATCGGCGGCGCTCGCACGGGTGCTCGAGCGCGCCGAGCAGCTGCGCGGTGAGTACGGCGACGACTACCTCTC CGTCGAGCACGTCCTGCTCGCCATGGCGGCCGTGCTCAAGGTCGACGAGGCGACGCTGCGCCAGGCGATCGACGCCGTGC GTGGCGGACGCCGTGTGACCTCGGCCGACCCCGAGGACACCCTAGAAGCGCTCACCAAGTACGGGCGCGACCTCACCGAG GCTGCACGCGCAGGCTCCATCGACCCCGTGATCGGCCGTGACGAAGAGATCCGTCGGGTCATCCAGATCCTCTCGCGTCG GCAGAAGAACAACCCGGTCCTCATCGGCGAACCCGGCGTCGGCAAGACCGCGATCGTCGAGGGGCTCGCACGCCGGATCG TCGAAGGTGACGTGCCCGAAGGCCTGCGCGGCAAGCGGATCATCGCGCTCGATCTCGGCTCCATGGTCGCAGGAGCGCAG TACCGCGGTCAGTTCGAGGAACGCCTCAAGAGCGTGCTCGACGCCATTCGCCAGAGCGAAGGCGAGGTCATCACCTTCAT CGACGAGCTCCACACCGTGGTCGGTGCGGGTGCGGCCGAGGGATCGCTCGACGCCTCCAACATGCTCAAGCCCATGCTCG CGCGCGGCGAGCTGCGCATGATCGGCGCGACCACCCTCGACGAGTATCGCAAGCACATCGAGTCCGACGCCGCACTCGAG CGACGCTTCGCCAAGGTCATGGTCGACCAGCCCAGCGTCGAGGAGACGGTCGCGATCCTGCGCGGCTTGAAGGAGCGCTA CGAGGTGCACCACGGCGTGCGGATCCAAGACGCCGCCCTGGTCGCTGCCGCGGTCCTGTCGGATCGCTACATCACCGATC GCTTCTTGCCCGACAAGGCGATCGACCTCGTGGACGAGGCCATGGCCCGACTGCGCATGGAGATCGACTCGCGACCCGAG GAGATCGACTCCGTCGAGCGCCGTCTGCGCCAGCTCGAGATCGAGCGCATCTCACTCGCGACCGAGACCGACCGCGCCTC ACGCGAGCGCCTCACCCGCCTCGACCAGGACATCGAGGCCACGAAGCTCGAGCTCAGTGAGCTGACCCGCCAGTGGCAAG CCGAACGGGAAGCGATCGACGTCATCCGCCAGCGCAAGGAGCACCTCGAGGAGCTGCGTGCCCAGTCGGAAGCCTACGAG CGCCAAGGCATGCTGGACCGCGCCGCCGAGCTGCGCTATGGCGAGATCCCTCGCCTCGAGCGCGAGATCGAGGAGGCGAC CGAAGAACTCTCGAAGCGCCAGGGTGGCCGGCGCATGCTCAAGGAGGAGGTCGACCCCGAGGACATCGCCGAGGTGGTCG CGGCCGCGACCGGCATCCCGGTGACCAAGCTCCTCGAGAGCGAGACCGAGAAGCTGCTCCACATCGAAGACGCACTGCGT GCGCGGGTGGTGGGTCAAGACGAGGCGATCGACGCGGTGGCGAACGCCATCCGGCGCAGCCGTGCCGGCATCGCCGATCG GAACCGCCCCATCGGCTCCTTCCTCTTCCTCGGCCCGACGGGCGTCGGCAAGACCGAGACCGCCAAGGCGCTCGCGGAGT ACCTCTTCGACGACGAGCGAGCCATGATCCGCATCGACATGAGCGAGTACCAGGAGCGTCACAGCGTCTCGCGCCTCGTC GGTGCGCCCCCTGGCTACGTCGGCTACGACGAGGGCGGACAGCTCACCGAGGCGGTGCGGCGCCGTCCCTACGCGGTGGT CCTCTTCGACGAGATCGAGAAGGCGCACGCCGACGTGTTCAACGTGTTCCTCCAGATCCTCGACGACGGCCGCCTCACCG ACGGTCAGGGGCGGGTGGTGAACTTCACGAACACCATCCTCATCATGACCTCGAACCTCGCCGACGATCCGCGGCGCTTC TTCAAGCCCGAGTTCGTGAACCGCATCGACGAGATCGTGCGCTTCCACGAGCTCACCTCGGACCAGATCCGCGCCATCGT CGACCGCCAGATGGCCCAACTCGCCGGTCGGCTCGCCGAGCGCTCACTCGGTCTCGAGGTCACCGACGCCGCGGCGGCCC TGCTGGCCGAGCGCGGCTGGGATCCGGCCTTCGGTGCTCGACCCCTGCGTCGAGCCATCCAACGCCTCGTCGGCGACCCG CTGGCCAGAGCGCTTCTCGAAGGGCGCTACGGCGAGGGAGACACGGTCGTGGTCGACGCGGCCGACGGCGCCATCGTGCT GCGCTGA Protein sequence : MRTDHFTHKLQEALQDAKRLATERQNPEVTPQHLALALLGQPDGMALAVLSRAGIAPASVRNQLLEALERLPRAYGQAAE PAGSAALARVLERAEQLRGEYGDDYLSVEHVLLAMAAVLKVDEATLRQAIDAVRGGRRVTSADPEDTLEALTKYGRDLTE AARAGSIDPVIGRDEEIRRVIQILSRRQKNNPVLIGEPGVGKTAIVEGLARRIVEGDVPEGLRGKRIIALDLGSMVAGAQ YRGQFEERLKSVLDAIRQSEGEVITFIDELHTVVGAGAAEGSLDASNMLKPMLARGELRMIGATTLDEYRKHIESDAALE RRFAKVMVDQPSVEETVAILRGLKERYEVHHGVRIQDAALVAAAVLSDRYITDRFLPDKAIDLVDEAMARLRMEIDSRPE EIDSVERRLRQLEIERISLATETDRASRERLTRLDQDIEATKLELSELTRQWQAEREAIDVIRQRKEHLEELRAQSEAYE RQGMLDRAAELRYGEIPRLEREIEEATEELSKRQGGRRMLKEEVDPEDIAEVVAAATGIPVTKLLESETEKLLHIEDALR ARVVGQDEAIDAVANAIRRSRAGIADRNRPIGSFLFLGPTGVGKTETAKALAEYLFDDERAMIRIDMSEYQERHSVSRLV GAPPGYVGYDEGGQLTEAVRRRPYAVVLFDEIEKAHADVFNVFLQILDDGRLTDGQGRVVNFTNTILIMTSNLADDPRRF FKPEFVNRIDEIVRFHELTSDQIRAIVDRQMAQLAGRLAERSLGLEVTDAAAALLAERGWDPAFGARPLRRAIQRLVGDP LARALLEGRYGEGDTVVVDAADGAIVLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-93 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-98 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-98 | 41 |
