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Name : Afer_1906 (Afer_1906) Accession : YP_003110484.1 Strain : Acidimicrobium ferrooxidans DSM 10331 Genome accession: NC_013124 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1995658 - 1997154 bp Length : 1497 bp Strand : - Note : TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); nucleic acid binding OB- fold tRNA/helicase-type; KEGG: cya:CYA_0333 lysyl-tRNA synthetase DNA sequence : ATGAGCGCAGATGAACGTCGAGCGCCCGACGCTGAGACCGCAGCGCTCTTCGTGCCTCCGTACGCCTTTGGCGGGGTGGA GCCCGTCGATGTCGTGCGACGGCGGAGCGAGGGTCTCGCGCCCGACACCGTCACCGATCAGCAGGTCCGGGTGGCCGGAC GGATCTTGCGCCTCAGGCGGCAAGGGAGGATGGCGTTCGGGGAGCTTCGAGACGCGAGCGGAGCGATCCAGCTCTGGCTG CGCGCCGATCGCACCCAGGCGTTCTCGACGCTGGCCGATTCCCTGGTGCTCGGCGACTGGGTCGGCGTCGACGGTGTGAT CGCGACCACGAGGACCGGCGAGCGCTCCGTCCTCGTTGATCGGATCCAGCTTCTTGCGCATGCGCGCCGATCGTTCGGCG ACAAGTGGCGGGGTGTGCGCGATCCCGACGTGCGTTACCGCCAGCGCTACGTGGATCTGTGGGCCAACCCCGGGGTGCGC GAGCGCTTCCTCGCCCGCAGCCGACTCGTGCGAGCCCTTCGCGACGAACTCGACGCACGGGGCTTCGTCGAGGTCGAGAC GCCGATCTTGCAGCCCATTGCCTCGGGCGCGGCCGCTCGACCCTTCGTGACCCACCACAACGCGCTCGACATGGACCTGT ACCTCAGGATCGCCCCTGAGCTCTACCTCAAGCGACTTGTGGTCGGCGGGATCGAGCGTGTGTTCGAACTCGGCCGGGAC TTCCGGAACGAGGGTATCTCGCCTCGCCACAACCCCGAGTTCACGATGCTCGAGGCCTACCAGGCCTACGGCGACATCGA CGCGATGCGCGAGCTCACGGAAGGGCTGCTCGCGAGCGCAGCGCGCGCTGTCTTCGGGTCGACCCGCGGCGAGAACGAGC TCGGTGTGATCGATCTGACCCCGCCGTTTCGCGCGGCGACGATGGAGGATCTCGTCTCGGAGGCGGTCGGCGAGCGGGTC AGCCTCGACGAGCCCGCACGACTGCTCGACCTCGCTCGACGGTTCGATCTTGCCGTGCTCGAGCCGGAGGCGGGGCGGGC GTTGGTCGCGCTCTACGAGGAGCTCGTGGAACCGCGACTCATCGAACCGACGTTCGTACTGGACTTCCCTGAGTCCGTCT CGCCGCTCGCTCGTCGTCACCGGTCGCGACCGGGGCGAGTCGAGCGCTTCGAGCTGGTCGTCGGGGGCCGCGAGCTCGTC AACGCCTTCAGCGAGCTCAACGATCCGGACGAGCAGCGTGCTCGCTTCGAGGAGCAGGCTCGTCAGCGCCGTGCCGGTGA CGACGAGGCGATGGCCTACGACGCGGACTACGTGCGGGCACTCGAGTATGGCCTGCCACCGACGGGTGGTCTCGGCCTCG GTGTGGATCGGCTCGCCATGCTGCTCACAGGGCAGCGCCACATCAAGGAGGTCATTCTCTTCCCGACCCTGCGACCGGAG GCGGGATCCTCGGAGAGCGATGTCGACGAGGATGGCGCATCCGACGAGACGGCGTGA Protein sequence : MSADERRAPDAETAALFVPPYAFGGVEPVDVVRRRSEGLAPDTVTDQQVRVAGRILRLRRQGRMAFGELRDASGAIQLWL RADRTQAFSTLADSLVLGDWVGVDGVIATTRTGERSVLVDRIQLLAHARRSFGDKWRGVRDPDVRYRQRYVDLWANPGVR ERFLARSRLVRALRDELDARGFVEVETPILQPIASGAAARPFVTHHNALDMDLYLRIAPELYLKRLVVGGIERVFELGRD FRNEGISPRHNPEFTMLEAYQAYGDIDAMRELTEGLLASAARAVFGSTRGENELGVIDLTPPFRAATMEDLVSEAVGERV SLDEPARLLDLARRFDLAVLEPEAGRALVALYEELVEPRLIEPTFVLDFPESVSPLARRHRSRPGRVERFELVVGGRELV NAFSELNDPDEQRARFEEQARQRRAGDDEAMAYDADYVRALEYGLPPTGGLGLGVDRLAMLLTGQRHIKEVILFPTLRPE AGSSESDVDEDGASDETA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-76 | 46 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 4e-60 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Afer_1906 | YP_003110484.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-76 | 46 |
